View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_low_63 (Length: 343)
Name: NF3229_low_63
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_63 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 182 - 326
Target Start/End: Complemental strand, 37573586 - 37573435
Alignment:
| Q |
182 |
ctgcactgcacaaaacggctacagcagaagaaga---gacataacaaac----cattgtttactgctcactcactccctcgcacagctagctagctgtac |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37573586 |
ctgcactgcacaaaacggctacagcagaagaagaagagacataacaaacaaaccattgtttactgctcactcactccctcgcacagctagctagctgtac |
37573487 |
T |
|
| Q |
275 |
tgtacgtacgtgtgtacaatctctctctaatatctccttaccacgtgtctct |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37573486 |
tgtacgtacgtgtgtacaatctctctctaatctctccttaccacgtgtctct |
37573435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 37573735 - 37573651
Alignment:
| Q |
17 |
gcacaaataaaccatatggtgatgacatgttatatgatatgataaatgcaaaaacaaaagatgaaaagaaggtgtagcctgcgtg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37573735 |
gcacaaataaaccatatggtgatgacatgttatatgatatgataaatgcaaaaacaaaagatgaaaagaaggtgtagcgtgcgtg |
37573651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University