View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_64 (Length: 339)
Name: NF3229_low_64
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 27822511 - 27822220
Alignment:
| Q |
14 |
cttttggcccaagctacaagcttaggacactctttctcaatgcttagtttcccatatatctcgtaagtgtaaaaccaactagtgaagggtataagagcca |
113 |
Q |
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| T |
27822511 |
cttttggcccaagctacaagcttaggacactctttctcaatgcttaatttcccatatgtctcgtaagtgtaaaaccaaccagtgaagggtataagagcca |
27822412 |
T |
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| Q |
114 |
catcaacatacccaaactcatctccaccaaaatatggcttgtctccaagctcaccttctagagtcttcaagcattctataaacttctttttaccctcttc |
213 |
Q |
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| T |
27822411 |
catcaacatacccaaactcatctccaccaaaatatggcttgtctccaagctcatcttctagagtcttcaagcattctataaacttctttttaccctcttc |
27822312 |
T |
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| Q |
214 |
ttgttcttcaccctttcctgtccacaccttctttccaatgttgtatacctacatcaattagaatccaataaattaaaccatgataccctatg |
305 |
Q |
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| T |
27822311 |
ttgttcttcaccctttcctgtccacaccttctttccaatgttgtatacctacatcaattagaatccaataaattaaaccatgataccctatg |
27822220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 27826450 - 27826158
Alignment:
| Q |
14 |
cttttggcccaagctacaagcttaggacactctttctcaatgcttagtttcccatatatctcgtaagtgtaaaaccaactagtgaagggtataagagcca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27826450 |
cttttggcccaagctacaagcttaggacactctttctcaatgcttagtttcccatatatctcgtaagtgtaaaaccaactagtgaagggtataagagcca |
27826351 |
T |
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| Q |
114 |
catcaacatacccaaactcatctccaccaaaatatggcttgtctccaagctcaccttctagagtcttcaagcattctataaacttctttttaccctcttc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || || |
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| T |
27826350 |
catcaacatacccaaactcatctccaccaaaatatggcttgtctccaagctcatcttctagagtcttcaagccttctataaacttctttttaccttcctc |
27826251 |
T |
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| Q |
214 |
ttgttcttcaccctttcctgtccacaccttctttccaatgttgtatacctacatcaattagaatccaa-taaattaaaccatgataccctatg |
305 |
Q |
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|||||||||| |||||||| |||| | |||| ||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
27826250 |
ttgttcttcaacctttcctttccatagcttccttcgaatgctgtatacctacatcaattagaatccaacaaaattaagccatgataccctatg |
27826158 |
T |
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