View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3229_low_65 (Length: 338)

Name: NF3229_low_65
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3229_low_65
NF3229_low_65
[»] chr4 (3 HSPs)
chr4 (16-338)||(28371937-28372259)
chr4 (16-338)||(44769220-44769546)
chr4 (219-337)||(28198678-28198796)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 28371937 - 28372259
Alignment:
Q  16 acttcaacatctcatcgcaatggttagttcctctccatctcttttccaaatcttttcgttaacgtcttcaaacatttctatgattttcactgattattct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28371937 acttcaacatctcatcgcaatggttagttcctctccatctcttttccaaatcttttcgttaacgtcttcaaacatttctatgattttcactgattattct 28372036  T
Q  116 aatttctaaattattccatgtcttttcatccattttctcattttcaattcacaattcgttttacggtaacccactccattggttatgtccctttttatgt 215  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28372037 aatttcgaaattattccatgtcttttcatccattttctcattttcaattcacaattcgttttacggtaacccactccatcggttatgtccctttttatgt 28372136  T
Q  216 ttcatgctcaaatatttaaactttggtttgattttgattgttttgtttgtaatgatttcatttcggcttttgggtgttctgggtttccgaaaagtgcgtg 315  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28372137 ttcatgctcaaatatttaaacttgggtttgattttgattgttttgtttgtaatgatttgatttcggcttttgggtgttctgggtttccgaaaagtgcgtg 28372236  T
Q  316 taaaatgtttgatgaaagtcctc 338  Q
    |||||||||||||||||||||||    
T  28372237 taaaatgtttgatgaaagtcctc 28372259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 44769546 - 44769220
Alignment:
Q  16 acttcaacatctcatcgcaatggttagttcctctccatctcttttccaaatcttttcgttaacgtcttcaaacatttctatgattttcactgattattct 115  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44769546 acttcaacatctcatcgcaatggttttttcctctctatctcttttccaaatcttttcgttaacgtcttcaaacatttctatgattttcactgattattct 44769447  T
Q  116 aatttctaaattattccatgtcttttcatccattttctcattttcaattcacaattcgttttacggtaacccactccattggttatgtccctttttatgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44769446 aatttctaaattattccatgtcttttcatccattttctcattttcaattcacaattcgttttacggtaacccactccatcggttatgtccctttttatgt 44769347  T
Q  216 ttcatgctcaaatattta----aactttggtttgattttgattgttttgtttgtaatgatttcatttcggcttttgggtgttctgggtttccgaaaagtg 311  Q
    ||||||||||||||||||    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44769346 ttcatgctcaaatatttaaactaacttgggtttgattttgattgttttgtttgtaatgatttcatttcggcttttgggtgttctgggtttccgaaaagtg 44769247  T
Q  312 cgtgtaaaatgtttgatgaaagtcctc 338  Q
    |||||||||||||||||||||||||||    
T  44769246 cgtgtaaaatgtttgatgaaagtcctc 44769220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 28198678 - 28198796
Alignment:
Q  219 atgctcaaatatttaaactttggtttgattttgattgttttgtttgtaatgatttcatttcggcttttgggtgttctgggtttccgaaaagtgcgtgtaa 318  Q
    |||||||| | ||||||||| ||||||||  |||||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||| |||||||||    
T  28198678 atgctcaagtttttaaacttgggtttgatcatgattgttttgtttgtaatggtttcatttctgcttttgggtgttctgggtttatgaaaaatgcgtgtaa 28198777  T
Q  319 aatgtttgatgaaagtcct 337  Q
    | |||||||||||||||||    
T  28198778 agtgtttgatgaaagtcct 28198796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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