View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_68 (Length: 330)
Name: NF3229_low_68
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_68 |
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| [»] scaffold0284 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 38259568 - 38259253
Alignment:
| Q |
1 |
cccttgaacgatatgaagtgtggactaatgcgactgtcgaggacgtatgacctaacttatgccaaactcaaaccattttttaaaaatatcaagacaagag |
100 |
Q |
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| T |
38259568 |
cccttgaacgatatgaagtgtggactaatgcgactgtcgaggacgtatgacctaacttacgccaaactcaaatcatttttttaaaatatcaagacaagag |
38259469 |
T |
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| Q |
101 |
cttttttaaaagtatatttggctaaaaatgtttgattacatgccactgtaaaggtcttttagatttgttaatgtattaaatgtaagttagaagtctcata |
200 |
Q |
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| T |
38259468 |
cttttttaaaagtatatttggctaaaaatgtttgattacatgccactgtaaagatcttttagatttgttaatgtattaagtgtaagttagaagtctcata |
38259369 |
T |
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| Q |
201 |
ttagatgaaaaaatagatgttgaacaaaacacagatgaaacaatctatatatctaatgtcttaaaatttctaatgaaaatgtggtgttaaaattcacttg |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38259368 |
ttagatgaaaaaatagatgttgaacaaaatacagatgaaacaatctatatatctaatgtcttaaaatttctgatgaaaatgtggtgttaaaattcacttg |
38259269 |
T |
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| Q |
301 |
tgtggtggttcttagt |
316 |
Q |
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|||||||||||||||| |
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| T |
38259268 |
tgtggtggttcttagt |
38259253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 35977567 - 35977637
Alignment:
| Q |
246 |
tatatatctaatgtcttaaaatttctaatgaaaatgtggtgttaaaattcacttgtgtggtggttcttagt |
316 |
Q |
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| T |
35977567 |
tatatatcaaatgtcttaaaattttggatgaagatgtgatgttcaaattcatttgtgtgattgttcttagt |
35977637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 23210936 - 23210899
Alignment:
| Q |
189 |
agaagtctcatattagatgaaaaaatagatgttgaaca |
226 |
Q |
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| T |
23210936 |
agaagtctcatattagatgaaaaaatggatgttgaaca |
23210899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0284 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0284
Description:
Target: scaffold0284; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 6501 - 6441
Alignment:
| Q |
166 |
tgttaatgtattaaatgtaagttagaagtctcatattagatgaaaaaatagatgttgaacaa |
227 |
Q |
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| T |
6501 |
tgttaatgtatcaaatgtgagtta-aagttccatattggatgcaaaaatagatgttgaacaa |
6441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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