View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3229_low_71 (Length: 328)
Name: NF3229_low_71
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_71 |
 | |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0246 (1 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr6 (5 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0555 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 80 - 328
Target Start/End: Complemental strand, 31769807 - 31769559
Alignment:
| Q |
80 |
gtcgcgcctatggaggttacgtctggtcggcaacctctcttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagtt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
31769807 |
gtcgcgcctatggaggttacgtctggtcggcaacctgtcttcagcaaacgccaagctacaatggacaccttcataggaaactgcttatgccaaactagtt |
31769708 |
T |
|
| Q |
180 |
ctctagttgcatctattgttgaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacct |
279 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || ||| |
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|
| T |
31769707 |
ctctagttgcatctattgttgaggaaatcggagctgtcagaatctgataagtgcctcgcacagtgtaaccatcatgaatatctggatcccattaccgcct |
31769608 |
T |
|
| Q |
280 |
gtcaataatattagcctgcacaggaacatcatcaagtaattgcctacac |
328 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31769607 |
gtcaataatattagcctgcacagaaacatcatcaagtaattgcctacac |
31769559 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 31769937 - 31769870
Alignment:
| Q |
11 |
cagagacaccaatccaagaccgaatatgctgccatagcgacccgaaaacatcacaatggagaaacaga |
78 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31769937 |
cagacacaccaatccaagaccggatatgctgccatagcgacccgaaaacatcacaatggagaaacaga |
31769870 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 101 - 328
Target Start/End: Original strand, 22123 - 22351
Alignment:
| Q |
101 |
tctggtcggcaacctctctt-cagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgtt |
199 |
Q |
| |
|
||||||||| ||||| |||| ||||||||| ||||||||||| ||||||| | |||| ||||||||||||| || || ||||| ||||| || |||| |
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|
| T |
22123 |
tctggtcggtaacctgtctttcagcagacgtcaagctacaataaacaccttgagaggagcctgcttatgccatacaaggtctcttgttgcttcagttgtg |
22222 |
T |
|
| Q |
200 |
gaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgca |
299 |
Q |
| |
|
|| || || || ||||||||||||||| | |||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
22223 |
gaagagacctgagttgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatcccactgccacctgtcaataatattagcctgca |
22322 |
T |
|
| Q |
300 |
caggaacatcatcaagtaattgcctacac |
328 |
Q |
| |
|
|| |||| |||||||||||||||||||| |
|
|
| T |
22323 |
caataacaccatcaagtaattgcctacac |
22351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 101 - 328
Target Start/End: Original strand, 40484184 - 40484412
Alignment:
| Q |
101 |
tctggtcggcaacctctctt-cagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgtt |
199 |
Q |
| |
|
||||||||| ||||| |||| ||||||||| ||||||||||| ||||||| | |||| ||||||||||||| || || ||||| ||||| || |||| |
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|
| T |
40484184 |
tctggtcggtaacctgtctttcagcagacgtcaagctacaataaacaccttgagaggagcctgcttatgccatacaaggtctcttgttgcttcagttgtg |
40484283 |
T |
|
| Q |
200 |
gaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgca |
299 |
Q |
| |
|
|| || || || ||||||||||||||| | |||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
40484284 |
gaagagacctgagttgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatcccactgccacctgtcaataatattagcctgca |
40484383 |
T |
|
| Q |
300 |
caggaacatcatcaagtaattgcctacac |
328 |
Q |
| |
|
|| |||| |||||||||||||||||||| |
|
|
| T |
40484384 |
caataacaccatcaagtaattgcctacac |
40484412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 9690589 - 9690672
Alignment:
| Q |
245 |
taaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattgcctacac |
328 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||||| || ||||| ||||||| |||| ||||||||| |||||||| |
|
|
| T |
9690589 |
taaccatcatgagtatccggatctcactgccacctgtcagaaacattagtctgcacacaaacagtatcaagtaaaagcctacac |
9690672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 19120126 - 19120169
Alignment:
| Q |
128 |
cgccaagctacaatggacaccttcataggaacctgcttatgcca |
171 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
19120126 |
cgccaagcaaaaatggaaaccttcataggaacctgcttatgcca |
19120169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 41879140 - 41879085
Alignment:
| Q |
119 |
ttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaac |
174 |
Q |
| |
|
|||||||||||||| || || || |||||||||| ||| ||||||||||||||||| |
|
|
| T |
41879140 |
ttcagcagacgccacgcgaccatagacaccttcaaagggacctgcttatgccaaac |
41879085 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 42272978 - 42273030
Alignment:
| Q |
119 |
ttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgcca |
171 |
Q |
| |
|
||||||| || |||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
42272978 |
ttcagcaaactccaagctacaatagacaccttgaggggaacctgcttatgcca |
42273030 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 119 - 328
Target Start/End: Original strand, 31706771 - 31706981
Alignment:
| Q |
119 |
ttcagcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgttgaggaaactgaagctgtca |
218 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||||||||||||||||| || || ||||| |||| || | |||||| || || | ||||| |
|
|
| T |
31706771 |
ttcagcatacgccgagctacaatggacaccttcagaggaacctgcttatgccatacaaggtctcttgttgtgtcaactgttgaagagaccagtgttgtca |
31706870 |
T |
|
| Q |
219 |
gaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgcc-acctgtcaataatattagcctgcacaggaacatcatcaagta |
317 |
Q |
| |
|
|||||||||| | ||| |||| |||| |||||||| || |||||||| || |||| || ||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
31706871 |
gaatctgataggcacctcacacaatgtacccatcatgcatgtctggatcccactgcccacatgtcaataatattagcctgcacaataacaccatcaagta |
31706970 |
T |
|
| Q |
318 |
attgcctacac |
328 |
Q |
| |
|
||||| ||||| |
|
|
| T |
31706971 |
attgcatacac |
31706981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 27317266 - 27317331
Alignment:
| Q |
11 |
cagagacaccaatccaagaccgaatatgctgccatagcgacccgaaaacatcacaatggagaaaca |
76 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27317266 |
cagacacaccaatccaagaccggatatgctgccatagcgactcgaaaacatcacaatggagaaaca |
27317331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 27580865 - 27580933
Alignment:
| Q |
11 |
cagagacaccaatccaagaccgaa---tatgctgccatagcgacccgaaaacatcacaatggagaaaca |
76 |
Q |
| |
|
|||| ||||||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
27580865 |
cagacacaccaatccaagaccggaggatatgctgccataacgacctgaaaacatcacaatggagaaaca |
27580933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 32185855 - 32185905
Alignment:
| Q |
251 |
tcatgaatatctggatctcattgccacctgtcaataatattagcctgcaca |
301 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
32185855 |
tcatgaatgtttggatcccactgccacctgtcaagaatattagcctgcaca |
32185905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 14844229 - 14844185
Alignment:
| Q |
127 |
acgccaagctacaatggacaccttcataggaacctgcttatgcca |
171 |
Q |
| |
|
||||||||| | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
14844229 |
acgccaagccagaatggaaaccttcaaaggaacctgcttatgcca |
14844185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 328
Target Start/End: Original strand, 42259323 - 42259529
Alignment:
| Q |
122 |
agcagacgccaagctacaatggacaccttcataggaacctgcttatgccaaactagttctctagttgcatctattgttgaggaaactgaagctgtcagaa |
221 |
Q |
| |
|
|||||||||||||| |||||| | ||||| | |||||||||||||||||||| || |||||| |||| || | || || || || | || ||||| || |
|
|
| T |
42259323 |
agcagacgccaagcaacaatgaaaacctttagaggaacctgcttatgccaaatgagatctctaattgcgtcaaaagtggaagagaccggagttgtcataa |
42259422 |
T |
|
| Q |
222 |
tctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattg |
321 |
Q |
| |
|
| ||||||| |||||||||| || || ||||| || ||||||| || ||||||||||||| |||||||||||||||| ||| |||||||||| | |
|
|
| T |
42259423 |
tgtgataagaacctcgcacagtatatccctcatgtatgtctggatgccactgccacctgtcaagaatattagcctgcacaaatacactatcaagtaatag |
42259522 |
T |
|
| Q |
322 |
cctacac |
328 |
Q |
| |
|
||||||| |
|
|
| T |
42259523 |
cctacac |
42259529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 328
Target Start/End: Complemental strand, 40167369 - 40167258
Alignment:
| Q |
217 |
cagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagt |
316 |
Q |
| |
|
||||||| |||||| ||||||| || || |||||||| || |||||||| || |||||||||||| |||||||||||||||| ||| |||||| | |
|
|
| T |
40167369 |
cagaatccgataagcacctcgcactgtatacccatcatgtatgtctggatcccacagccacctgtcaagaatattagcctgcacaaatacaccatcaaat |
40167270 |
T |
|
| Q |
317 |
aattgcctacac |
328 |
Q |
| |
|
||| |||||||| |
|
|
| T |
40167269 |
aatagcctacac |
40167258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 476261 - 476305
Alignment:
| Q |
127 |
acgccaagctacaatggacaccttcataggaacctgcttatgcca |
171 |
Q |
| |
|
||||||||| | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
476261 |
acgccaagccaaaatggaaaccttcaaaggaacctgcttatgcca |
476305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 7716 - 7763
Alignment:
| Q |
127 |
acgccaagctacaatggacaccttcataggaacctgcttatgccaaac |
174 |
Q |
| |
|
||||||||| | |||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
7716 |
acgccaagccataatggaaaccttcaaaggaacctgcttatgccaaac |
7763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 18634962 - 18634997
Alignment:
| Q |
139 |
aatggacaccttcataggaacctgcttatgccaaac |
174 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18634962 |
aatggaaaccttcataggaacctgcttatgccaaac |
18634997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 11579631 - 11579585
Alignment:
| Q |
128 |
cgccaagctacaatggacaccttcataggaacctgcttatgccaaac |
174 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
11579631 |
cgccaagcaagaatggacaccttcattggaacatgcttatgccaaac |
11579585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 28357940 - 28357986
Alignment:
| Q |
128 |
cgccaagctacaatggacaccttcataggaacctgcttatgccaaac |
174 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
28357940 |
cgccaagcaacaatggaaaccttcaaagggacctgcttatgccaaac |
28357986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 3545193 - 3545149
Alignment:
| Q |
127 |
acgccaagctacaatggacaccttcataggaacctgcttatgcca |
171 |
Q |
| |
|
||||||||| | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
3545193 |
acgccaagccagaatggaaaccttcaaaggaacctgcttatgcca |
3545149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 42579526 - 42579494
Alignment:
| Q |
139 |
aatggacaccttcataggaacctgcttatgcca |
171 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
42579526 |
aatggacaccttcattggaacctgcttatgcca |
42579494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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