View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_72 (Length: 327)
Name: NF3229_low_72
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 37224315 - 37224629
Alignment:
| Q |
1 |
cattgtgaagaacttgaaggccactaactccattctggatgaggaggttcaagaggccatgatcggaatgtgggggcattcccattgcaagctcaggttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37224315 |
cattgtgaagaacttgaaggccactaactccattctggatgaggaggttcaagaggccatgatcggaatgtgggggcattcccattgcaagatcaggttg |
37224414 |
T |
|
| Q |
101 |
aggacaaggaggataaagatttgctgccaacatttgtaaaccagaatctagattcattgttttgtctatatagttgacttccaaacccaaactttctgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37224415 |
aggacaaggaggataaagatttgctgccaacatttgtaaaccagaatctagattcattgttttgtctatatagttgacttccaaacccaaactttctgat |
37224514 |
T |
|
| Q |
201 |
attcctttgagaagttctctacctaatttccatgtttttctgctgtactctgcggatgtttccctacaaccgcacnnnnnnnnggataatttagaataca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37224515 |
attcctttgagaagttctctacctaatttccatgtttttctgctgtactctgcggatgtttccctacaaccgcacaaaaaaaaggataatttagaataca |
37224614 |
T |
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| Q |
301 |
aaccatcatgtccta |
315 |
Q |
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||||||||||||||| |
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| T |
37224615 |
aaccatcatgtccta |
37224629 |
T |
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