View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_73 (Length: 326)
Name: NF3229_low_73
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_73 |
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| [»] scaffold0062 (3 HSPs) |
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| [»] scaffold0443 (1 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 47889 - 48187
Alignment:
| Q |
9 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
108 |
Q |
| |
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||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47889 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
47988 |
T |
|
| Q |
109 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47989 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
48088 |
T |
|
| Q |
209 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
307 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48089 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
48187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 60428 - 60726
Alignment:
| Q |
9 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
108 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
60428 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
60527 |
T |
|
| Q |
109 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60528 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
60627 |
T |
|
| Q |
209 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60628 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
60726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 72547 - 72845
Alignment:
| Q |
9 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
108 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
72547 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
72646 |
T |
|
| Q |
109 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
72647 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
72746 |
T |
|
| Q |
209 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
72747 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
72845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 18691238 - 18691536
Alignment:
| Q |
9 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
108 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
18691238 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
18691337 |
T |
|
| Q |
109 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691338 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
18691437 |
T |
|
| Q |
209 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18691438 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
18691536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 15698977 - 15699275
Alignment:
| Q |
9 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
108 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
15698977 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
15699076 |
T |
|
| Q |
109 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15699077 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
15699176 |
T |
|
| Q |
209 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15699177 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
15699275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 15711516 - 15711814
Alignment:
| Q |
9 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
108 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
15711516 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
15711615 |
T |
|
| Q |
109 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15711616 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
15711715 |
T |
|
| Q |
209 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15711716 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
15711814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 15723994 - 15724292
Alignment:
| Q |
9 |
agcacagacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcaggatgagttttcttcctgcataggag |
108 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15723994 |
agcaccgacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcataggag |
15724093 |
T |
|
| Q |
109 |
aactcataagaaaactcaagaagagttgcaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15724094 |
aactcataagaaaactcaagaagagttccaaatccataaaactggtgtccattgctccaacagagcttctcaaaccccactaccataaattgtattgggc |
15724193 |
T |
|
| Q |
209 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15724194 |
caacaaagacataattaactgggttgactacaagttctacaatcagactgtgtccagcgcggatgaattggtaaatctctataataagttgcttaatga |
15724292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 8901 - 8933
Alignment:
| Q |
35 |
cataattgatggtattgatattaactatgagta |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8901 |
cataattgatggtattgatattaactatgagta |
8933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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