View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_75 (Length: 323)
Name: NF3229_low_75
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 48851719 - 48851874
Alignment:
| Q |
1 |
aaaagtaatagaaactagaaagagtagagagtatatagggagaggtagtagtagcagaagagagtgatgattttcagctgagtggctgtcacgcttgtct |
100 |
Q |
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| T |
48851719 |
aaaagtaatagaaactagaaagagtagagagtatatagggagaggtagtagtagcagaagagagtgatgattttcagctgagtggctgtcacgcttgtct |
48851818 |
T |
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| Q |
101 |
ttttatatatttatatgaa-atcaaatattaatattatattaaaggaaatgttaac |
155 |
Q |
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| T |
48851819 |
ttttatatatttatatgaatatcaaatattaatattataataaaggaaatgttaac |
48851874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 48851903 - 48851993
Alignment:
| Q |
215 |
attttttaatcttttaatgtattacacaactttccatgcaaatattactatatttgttcatttaaccggtgctcagagcactggttaacaa |
305 |
Q |
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| T |
48851903 |
attttttaatcttttaatgcattatacaacttttcatgtaaatattattatatttgttcatttaactggtgtccagaatactggttaacaa |
48851993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 36613342 - 36613272
Alignment:
| Q |
235 |
attacacaactttccatgcaaatattactatatttgttcatttaaccggtg-ctcagagcactggttaaca |
304 |
Q |
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| T |
36613342 |
attacacaactttccatgcaaatattactatatttgtttctttaactagtgtctcggagcactggttaaca |
36613272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 36621193 - 36621123
Alignment:
| Q |
235 |
attacacaactttccatgcaaatattactatatttgttcatttaaccggtg-ctcagagcactggttaaca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||| | | ||||||||||||||| |
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| T |
36621193 |
attacacaactttccatgcaaatattactatatttgtttctttaactagtgtcacggagcactggttaaca |
36621123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 270
Target Start/End: Original strand, 22926439 - 22926474
Alignment:
| Q |
235 |
attacacaactttccatgcaaatattactatatttg |
270 |
Q |
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| T |
22926439 |
attacacaactttcaatgcaaatattactatatttg |
22926474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 3435799 - 3435836
Alignment:
| Q |
235 |
attacacaactttccatgcaaatattactatatttgtt |
272 |
Q |
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|||||| ||||||| ||||||||||||||||||||||| |
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| T |
3435799 |
attacataactttcaatgcaaatattactatatttgtt |
3435836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 3525373 - 3525337
Alignment:
| Q |
235 |
attacacaactttccatgcaaatattactatatttgt |
271 |
Q |
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|||| ||||||||| |||||||||||||||||||||| |
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| T |
3525373 |
attatacaactttcaatgcaaatattactatatttgt |
3525337 |
T |
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