View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_86 (Length: 303)
Name: NF3229_low_86
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_86 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 32844846 - 32844563
Alignment:
| Q |
4 |
gaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgacgctgaaagccacaaagca |
103 |
Q |
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| T |
32844846 |
gaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaagccagcaaaacaatacttgcaaacatacacaacgctgaaagccacaaagca |
32844747 |
T |
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| Q |
104 |
taagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagacattggc |
203 |
Q |
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| T |
32844746 |
taagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagacattggc |
32844647 |
T |
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| Q |
204 |
gggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaatgatttatcccggaccttccaccctttct |
287 |
Q |
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| T |
32844646 |
gggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaatgatttattccggaccttccaccctttct |
32844563 |
T |
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Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 27745166 - 27744890
Alignment:
| Q |
4 |
gaacgagggaacctgaggtcgtgcgttgcaaggcccaagtgtggaaaaggccagcaaaacaatacttgcaaacatacacgacgctgaaagccacaaagca |
103 |
Q |
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|||||||||| ||||||| |||||| ||||||||||| | ||||||| ||| ||||| ||||||||||||| |||||| | |||||||||||||||||| |
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| T |
27745166 |
gaacgagggatcctgaggccgtgcgatgcaaggcccacatatggaaaatgcctgcaaagcaatacttgcaaagatacacaatgctgaaagccacaaagca |
27745067 |
T |
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| Q |
104 |
taagatgaggacggtgagggtgaaggctactagagccggtggggtcttgtatgttggggccggtggggtgtcgtacttaggctccgatgaagacattggc |
203 |
Q |
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| T |
27745066 |
taggatgaggacggtgagggtgaaggctactagtgccggtggggtcttatgtgctggagccggtggggggtcgtacttagattctgataaagacattgtc |
27744967 |
T |
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| Q |
204 |
gggatgagaaactatcaacaatggaatattattggttttcaaggtgaccggagaatgatttatcccggaccttccac |
280 |
Q |
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| T |
27744966 |
gaattgagaaactatcaacaatggactgttattggttttcaagatgagtagaggatgatttattcttgaccttccac |
27744890 |
T |
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