View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_88 (Length: 299)
Name: NF3229_low_88
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 9609828 - 9609577
Alignment:
| Q |
13 |
gagaaaaggaagtatagtcattccaaatgttcgaaacgtgtaaaaatatnnnnnnn-tggcactgaggaattaaaaatcatatgtacaatggttaaaaga |
111 |
Q |
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| T |
9609828 |
gagaaaaggaagtatagtcaatccaaatgttcgaaacgtgtaaaaatattaaaaaaatggcactgaggaattaaaaatcatatgtacaatggttaaaaga |
9609729 |
T |
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| Q |
112 |
aaatcaagccactcaaaaccctgtgttctattctatgttaggttttccaaatatttgtttggttgataaatatcttttttggttgatagtgaggatttcc |
211 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9609728 |
aaatcaagccactcaaaaccccgtgttctattctatgttaggttttccaaatatttg---------------------atggttgatagtgaggatttcc |
9609650 |
T |
|
| Q |
212 |
atgcatatgtttgagattgaacttattgcattcacacacttattatccagttacgcatatacttgtagtttgt |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9609649 |
atgcatatgtttgagattgaacttattgcattcacacacttattatccagttacgcatatacttgtagtttgt |
9609577 |
T |
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