View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_90 (Length: 296)
Name: NF3229_low_90
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 54153318 - 54153175
Alignment:
| Q |
47 |
ttgagatcagggcgagtatcatacaaatgttctacctaggttttatcagtgcttggaagctaatggaagataaaacagttctatcaaatggcataacatg |
146 |
Q |
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| T |
54153318 |
ttgagatcagggcgagtatcatacaaatgttctacttaggttttatcaatgcttggaagctaatggaagataaaacagttctatcaaatggcataacatg |
54153219 |
T |
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| Q |
147 |
acaccaaactacctatagaaaagttctgaatcctgagtaaaata |
190 |
Q |
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| T |
54153218 |
acaccaaactacctatagagaagttctgaatcctgagtaaaata |
54153175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 279
Target Start/End: Complemental strand, 54127985 - 54127779
Alignment:
| Q |
71 |
aaatgttctacctaggttttatcagtgcttggaagctaatggaagataaaacagttctatcaaatggcataacatgacaccaaactacctatagaaaagt |
170 |
Q |
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| T |
54127985 |
aaatgttctacttaggttttatcaatgcttggaagctgattgaagacaaagcagttctatcaaatggcataaaatgacaccaaactacctataaaacagt |
54127886 |
T |
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| Q |
171 |
tctgaatcctgagtaaaatacata-atgcacaactaaattcaaagccgttaataatcatcatcaacattattgtaatatgattcatcactagtggtagcc |
269 |
Q |
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| T |
54127885 |
tctaaaacaggagtaaactacatgcattcacaactatattcaaagctgttaatcatcaccattac---tattgtaatacgattcatcactaacggtagcc |
54127789 |
T |
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| Q |
270 |
tatagataac |
279 |
Q |
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| T |
54127788 |
tatagataac |
54127779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 54152197 - 54152107
Alignment:
| Q |
192 |
ataatgcacaactaaattcaaagccgttaataatcatcatca---acattattgtaatatgattcatcactagtggtagcctatagataac |
279 |
Q |
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| T |
54152197 |
ataatgcacaactaaattcaaagcggttaatcatcatcatcatcaacattattgtagtatgattcatcactagtggtagcctatagataac |
54152107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 54141078 - 54140944
Alignment:
| Q |
100 |
tggaagctaatggaagataaaacagttctatcaaatggcataacatgacaccaaactacctatagaaaagttctgaatcctgagtaaaatacat-aatgc |
198 |
Q |
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| T |
54141078 |
tggaagctaatggaaggcaaagcaattctattaaatggcataacatgacaccaaactacctaaaaaacagttcgaaaacatgagtgaaatacatgaatgc |
54140979 |
T |
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| Q |
199 |
acaactaaattcaaagccgttaataatcatcatca |
233 |
Q |
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| T |
54140978 |
acaactaaattcagagctgttaatcatcatcatca |
54140944 |
T |
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