View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3229_low_96 (Length: 285)
Name: NF3229_low_96
Description: NF3229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3229_low_96 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 41493 - 41217
Alignment:
| Q |
1 |
caacacaaaattaattcccaaatcacgttacgttaccgcaaaagctccgaattgtggcttcacagaaacgcgagtttgggactatattcacgttttatgg |
100 |
Q |
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|||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
41493 |
caacacaaaattaattcccaaatcacattacattgccgcaaaagctccgaattgtggcttcacagaaacgcgagttcgggactatattcacattttatgg |
41394 |
T |
|
| Q |
101 |
aatcacttctcaagttatccaaacataaaaaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagc |
200 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41393 |
aatcacttctgaagttatccaaacataaaaa-gtattgtgaaaccacctttcaaaaagctaactcgcgttggaggctacgaaacgcggaaccaaacgagc |
41295 |
T |
|
| Q |
201 |
acttaaaaccattattgattattttggatacactctctctcattc-----tcaatttccataaagcagtatcctccta |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
41294 |
acttaaaaccattattgattattttggatacactctctctctctcagctctcaatttccataaagcagtatcctccta |
41217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 37 - 205
Target Start/End: Original strand, 42752868 - 42753036
Alignment:
| Q |
37 |
cgcaaaagctccgaattgtggcttcacagaaacgcgagtttgggactatattcacgttttatggaatcacttctcaagttatccaaacataaaaaagtat |
136 |
Q |
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||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||| ||||| ||| | |||||||| ||||||||| |
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| T |
42752868 |
cgcaaaagctccgaattgtggcttctcacaaacgtgagtttgggactatattcacgttttatagaatcgcttctgaagctgcccaaacatcaaaaagtat |
42752967 |
T |
|
| Q |
137 |
tgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcactta |
205 |
Q |
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| T |
42752968 |
gttgaaaccacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgcggaaccaaacaagcactta |
42753036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 42599961 - 42599786
Alignment:
| Q |
30 |
acgttaccgcaaaagctccgaattgtggcttcacagaaacgcgagtttgggactatattcacgttttatggaatcacttctcaagttatccaaacataaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||| ||||| ||| | |||||||| || |
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| T |
42599961 |
acgttaccgcaaaagctccgaattgtggcttctcacaaacgtgagtttgggactatattcacgttttatagaatcgcttctgaagctgaccaaacatcaa |
42599862 |
T |
|
| Q |
130 |
aaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcactta |
205 |
Q |
| |
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||| || ||||||||| ||||||||| | ||||||||||||||||| | |||||||||||||||| |||||||| |
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|
| T |
42599861 |
aaaataagttgaaaccacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgcggaaccaaacaagcactta |
42599786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 31246958 - 31247131
Alignment:
| Q |
30 |
acgttaccgcaaaagctccgaattgtggcttcacagaaacgcgagtttgggactatattcacgttttatggaatcacttctcaagttatccaaacataaa |
129 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| || ||||| || |||||||||||||||||||||||| ||||| ||||| ||| | |||||||| || |
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| T |
31246958 |
acgttgccgcaaaagcttcgaattgtggcttctcacaaacgtgaatttgggactatattcacgttttatagaatcgcttctgaagctgcccaaacatcaa |
31247057 |
T |
|
| Q |
130 |
aaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcact |
203 |
Q |
| |
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||||||| | ||| ||| ||||||||| | ||||||||||||||||| | |||||||||||||||| |||||| |
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|
| T |
31247058 |
aaagtatgctaaaatcacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgcggaaccaaacaagcact |
31247131 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 38305417 - 38305250
Alignment:
| Q |
36 |
ccgcaaaagctccgaattgtggcttcacagaaacgcgagtttgggactatattcacgttttatggaatcacttctcaagttatccaaacataaaaaagta |
135 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||| ||||| ||| | |||||||| |||||||| |
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| T |
38305417 |
ccgcaaaagctccgaattgtggcttctcacaaacgtgagtttgggactatattcacgttttatagaatcgcttctgaagctgcccaaacatgaaaaagta |
38305318 |
T |
|
| Q |
136 |
ttgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcact |
203 |
Q |
| |
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| ||||||||| ||||||||| | |||||| |||||||||| | |||||||||||||||| |||||| |
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| T |
38305317 |
tgctgaaaccacgtttcaaaaagcaaactcgtgtttgaggcttccaaacgcggaaccaaacaagcact |
38305250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 54488014 - 54487842
Alignment:
| Q |
30 |
acgttaccgcaaaagctccgaattgtggcttcacagaaacgcgagtttgggactatattcacgttttatggaatcacttctcaagttatccaaacataaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||||||| |||| ||||| ||| | |||||||| || |
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| T |
54488014 |
acgttaccgcaaaagctccgaattgtggcttctcacaaacgtgagtttgagactatattcacgttttataaaatcgcttctgaagctgcccaaacatcaa |
54487915 |
T |
|
| Q |
130 |
aaagtattgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcac |
202 |
Q |
| |
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||||||| ||||||||| ||||||||| | ||||||||||||||||| | ||||| |||||||||| ||||| |
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| T |
54487914 |
aaagtatgttgaaaccacgtttcaaaaagcaaactcgcgtttgaggcttccaaacgtggaaccaaacaagcac |
54487842 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 4569671 - 4569836
Alignment:
| Q |
37 |
cgcaaaagctccgaattgtggcttcacagaaacgcgagtttgggactatattcacgttttatggaatcacttctcaagttatccaaacataaaaaagtat |
136 |
Q |
| |
|
||||||||||| |||||| ||||| || ||||| | |||||||||| ||||||||||| |||||||||||| | |||||| ||||||| ||||||||| |
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| T |
4569671 |
cgcaaaagctcataattgtcgcttctcataaacgtgggtttgggactgtattcacgtttgatggaatcacttatgaagttacccaaacagcaaaaagtat |
4569770 |
T |
|
| Q |
137 |
tgtgaaaccacctttcaaaaaactaactcgcgtttgaggctacgaaacgcggaaccaaacgagcac |
202 |
Q |
| |
|
||||||||| ||| ||||| | ||| ||||||||||||| | ||||| || ||||||| ||||| |
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| T |
4569771 |
gatgaaaccacgtttgaaaaagcaaacgcgcgtttgaggctgccaaacgtggtaccaaacaagcac |
4569836 |
T |
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