View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3230_low_1 (Length: 237)
Name: NF3230_low_1
Description: NF3230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3230_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 44516012 - 44516212
Alignment:
| Q |
20 |
agttttgctatatggtgcgagaagcacccccaagaattgcacgaagaggtggttgggtcccacataattttctttcctaatttttatatgnnnnnnncat |
119 |
Q |
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| T |
44516012 |
agttttgctatatggtgcgaaaagcacccccaagaattgcacgaacaggtggttgggtcccacataattttctttcctaatttttatatgtttttatcat |
44516111 |
T |
|
| Q |
120 |
atcaaaactacagtnnnnnnncatgtaagagaaaatgacgcaccgaacttccttctctccttaacattattgatacaaacatttgatatgccaccaacat |
219 |
Q |
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|||||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
44516112 |
atcaaaactacagt-aaaaaacatgtaagagaaaatcacgcactgaacttccttctctctttaacattattgatgcaaacatttgatatgccaccaacat |
44516210 |
T |
|
| Q |
220 |
ct |
221 |
Q |
| |
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|| |
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| T |
44516211 |
ct |
44516212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 16667701 - 16667903
Alignment:
| Q |
17 |
aacagttttgctatatggtgcgagaagcacccccaagaattgcacgaagaggtggttgggtcccacataattttctttcctaatttttatatgnnnnnnn |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16667701 |
aacagttttgctatatggtgcgagaagcacccc-aagaattgcacgaacaggtggttgggtcccacctaattttctttcctaatttttatatgttttttt |
16667799 |
T |
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| Q |
117 |
catatcaaaactacagtnnnnnnncatgtaagagaaaatgacgcaccgaacttccttctctccttaacattattgatacaaacatttgatatgccaccaa |
216 |
Q |
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||||||||||||||| | |||||||||||||| |||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
16667800 |
catatcaaaactacaataaaaaat-atgtaagagaaaatcacgcactgaacttccttctctctttaacattattgatgcaaacatttgatatgccaccaa |
16667898 |
T |
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| Q |
217 |
catct |
221 |
Q |
| |
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||||| |
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| T |
16667899 |
catct |
16667903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 36575902 - 36575701
Alignment:
| Q |
19 |
cagttttgctatatggtgcgagaagcacccccaagaattgcacgaagaggtggttgggtcccacataattttctttcctaatttttatatgnnnnnnnca |
118 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||| || |
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| T |
36575902 |
cagttttgctatatggtgctagaagcacccccaagaattgcacgaagaggtggttgggtcccacctaattttcttacgtaatttttctatgtttttttca |
36575803 |
T |
|
| Q |
119 |
tatcaaaactacagtnnnnnnncatgtaagagaaaatgacgcaccgaacttccttctctccttaacattattgatacaaacatttgatatgccaccaaca |
218 |
Q |
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||||||||| ||| | |||||||||||||| |||||| |||||| |||||||| |||||||||||||| |||||||||||||| ||||||||| |
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| T |
36575802 |
tatcaaaaccacaataaaaaat-atgtaagagaaaatcacgcactgaacttgcttctctctttaacattattgatgcaaacatttgatataccaccaaca |
36575704 |
T |
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| Q |
219 |
tct |
221 |
Q |
| |
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||| |
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|
| T |
36575703 |
tct |
36575701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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