View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_10 (Length: 518)
Name: NF3231_high_10
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 22 - 434
Target Start/End: Original strand, 34879262 - 34879681
Alignment:
| Q |
22 |
tgctgctgtaggagctgtgtctacaaccaaagatgtttccttcaatgctcatttggaggaagagcacaaaaacaaaggaaccaacaaggttggtgtcaac |
121 |
Q |
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| T |
34879262 |
tgctgctgtaggagctgtgtctacaaccaaagatgtttccttcaatgctcatttggaggaagagcacaaaaacaaaggaaccaacaaggttggtgtcaac |
34879361 |
T |
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| Q |
122 |
tatgatgaagctgaggaaattgtgccagatgaagatgaagaggaagaacccaagttggaattggatcttggccctcagttttctcttaaggaacaacttg |
221 |
Q |
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| T |
34879362 |
tatgatgaagctgaggaaattgtgccagatgaagatgaagaggaagaacccaagttggaattggatcttggccctcagttttctcttaaggaacaacttg |
34879461 |
T |
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| Q |
222 |
agaaagataaagtaaggttttcttttgaaatggtttctgaatttattttatttgtctctagtag-------tgnnnnnnnngatgcattggaaattttgt |
314 |
Q |
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| T |
34879462 |
agaaagataaagtaaggttttcttttgaaatggtttctgaatttattttatttgtctctagtagttttttttttttttttttatgcattggaaattttgt |
34879561 |
T |
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| Q |
315 |
tttgtattttaaaggatgatgaaagcttgaggaaatggaaagaacagcttctaggaaatgttgatgtgtctgctgttggaggtacttagcttcccctcaa |
414 |
Q |
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| T |
34879562 |
tttgtattttaaaggatgatgaaagcttgaggaaatggaaagaacagcttctaggaaatgttgatgtgtctgctgttggaggtacttagcttcccctcaa |
34879661 |
T |
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| Q |
415 |
ttttgtttttcttgtggaac |
434 |
Q |
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| T |
34879662 |
ttttgtttttcttgtggaac |
34879681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 401
Target Start/End: Complemental strand, 38371681 - 38371605
Alignment:
| Q |
325 |
aaaggatgatgaaagcttgaggaaatggaaagaacagcttctaggaaatgttgatgtgtctgctgttggaggtactt |
401 |
Q |
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| T |
38371681 |
aaaggatgatgaaagtttgagaaaatggaaagagcaacttctgggtagtgttgatatatctgctgttggaggtactt |
38371605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 38371827 - 38371772
Alignment:
| Q |
179 |
gaattggatcttggccctcagttttctcttaaggaacaacttgagaaagataaagt |
234 |
Q |
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| T |
38371827 |
gaattggatcttggtcctcaatttaccctcaaggaacagcttgagaaagataaagt |
38371772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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