View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_100 (Length: 220)
Name: NF3231_high_100
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_100 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 40310717 - 40310522
Alignment:
| Q |
1 |
ttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaag |
100 |
Q |
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|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |
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| T |
40310717 |
ttttaatcaagattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggtaag |
40310618 |
T |
|
| Q |
101 |
taacatatgttattatatactataaataacaaatactatactaatataatttggataggtcatgttacctatttatctatcaaaaatacttaattt |
196 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40310617 |
taacttatgttattatatactataaataacaaatactatactaatataatttggataagtcatgttacctatttatctatcaaaaatacttaattt |
40310522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 40320793 - 40320598
Alignment:
| Q |
1 |
ttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaag |
100 |
Q |
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|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |
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| T |
40320793 |
ttttaatcaagattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggtaag |
40320694 |
T |
|
| Q |
101 |
taacatatgttattatatactataaataacaaatactatactaatataatttggataggtcatgttacctatttatctatcaaaaatacttaattt |
196 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40320693 |
taacttatgttattatatactataaataacaaatactatactaatataatttggataagtcatgttacctatttatctatcaaaaatacttaattt |
40320598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 40330259 - 40330064
Alignment:
| Q |
1 |
ttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaag |
100 |
Q |
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|
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |
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| T |
40330259 |
ttttaatcaagattttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctctggtaag |
40330160 |
T |
|
| Q |
101 |
taacatatgttattatatactataaataacaaatactatactaatataatttggataggtcatgttacctatttatctatcaaaaatacttaattt |
196 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40330159 |
taacttatgttattatatactataaataacaaatactatactaatataatttggataagtcatgttacctatttatctatcaaaaatacttaattt |
40330064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 40313693 - 40313586
Alignment:
| Q |
1 |
ttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaag |
100 |
Q |
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|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||| |
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| T |
40313693 |
ttttaatcaagactttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctcttgtaag |
40313594 |
T |
|
| Q |
101 |
taacatat |
108 |
Q |
| |
|
||||||| |
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|
| T |
40313593 |
caacatat |
40313586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 40323769 - 40323662
Alignment:
| Q |
1 |
ttttaatcaagactttcatgtcacgtggtctgagccccatatcaagcaaattgatcaaggcaggactatccaactcaccctagaccaaggttctggtaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||| |
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| T |
40323769 |
ttttaatcaagactttcatgtcacgtggtcagaaccccatatcaagcaaattgatcaaggcagaactatccaacttaccctagaccaaggctcttgtaag |
40323670 |
T |
|
| Q |
101 |
taacatat |
108 |
Q |
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||||||| |
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| T |
40323669 |
caacatat |
40323662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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