View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3231_high_11 (Length: 505)
Name: NF3231_high_11
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 108961 - 108504
Alignment:
| Q |
18 |
aatcttatgtcaatagcctcagaaatcagcgtagaagcctatatcaagacgaaaaacatctcaggcccatatcatagaacaccctaatattttagttctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108961 |
aatcttatgtcaatagcctcagaaatcagcgtagaaacctatatcaagacgaaaaacctctcaggcccatatcatagaacaccctaatattttagttctt |
108862 |
T |
|
| Q |
118 |
tatacgtctcacttatattagtgaagagagaccatagtttgcttataagaagagagtattttggcgaggagaacaaccaataagaagacnnnnnnnngtg |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
108861 |
tatacgtcttacttatattagtgaagagagaccatagtttgcttataagaagagagtattttggcgaggagaacaaccaataagaagacaaaaaaaagtg |
108762 |
T |
|
| Q |
218 |
aaagcaactctcttttttgtcagaactcatagccataaaactgagactggaattcgtccaccgttaggtcaaacttaaactttgccaaaagactcgggat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108761 |
aaagcaactctcttttttgtcagaactcatagccataaaactgagactggaattcgtccaccgttaggtcaaacttaaactttgccaaaagactcgggat |
108662 |
T |
|
| Q |
318 |
atgtaaatcttcgtttgcattagatggatcgtcaaaaacaagtatggaaaaagagatatatctcctcacatcttcttgttctcatttattaggctaattt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108661 |
atgtaaatcttcgtttgcattagatggatcgtcaaaaacaagtatggaaaaagagatatatctcctcacatcttcttgttctcatttattaggctaattt |
108562 |
T |
|
| Q |
418 |
ttgggacaatttgtacactgtgtctctcttgtatacttatttgattacaatcaagcca |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
108561 |
ttgggacaatttgtacactgtgtctctcttgtatacttatttgattacaatcaagcca |
108504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University