View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_12 (Length: 502)
Name: NF3231_high_12
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 242 - 484
Target Start/End: Complemental strand, 19048163 - 19047927
Alignment:
| Q |
242 |
ggtggctgaagctcacacactttatatgtggagaagtgaagtattcgagatttaaacacaatctcttgcatgtattatattatatccatatcaattgagt |
341 |
Q |
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| T |
19048163 |
ggtggccgaagctgacacactttatatgtggagaagtgaagtgtttgacatttgaacacaatctcttgcatatattatacaatttttatatcaattgagt |
19048064 |
T |
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| Q |
342 |
taaatttactcgtttgagtttaccattactatattttgcatgactattactactttattatcttgattgggaaaggatgcatcggtgttgcatttcaatc |
441 |
Q |
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| T |
19048063 |
taagttcacga---tgaggacac-att--tgagttttgcatgactatttctactttattatcttgattgggaaaggatgcatcggtgttgcatttcaatc |
19047970 |
T |
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| Q |
442 |
ttccttcccttcgttttactcatttaataggtcctgataagtt |
484 |
Q |
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| T |
19047969 |
ttccttcccttcgttttactcatttaataggtcctgataagtt |
19047927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 19048820 - 19048725
Alignment:
| Q |
66 |
aagacggttgagccatgcaccggatttgagtttttgggtaagggattttgttgattgagtgtttggttactgtgttgttttgaactgttcgaaaat |
161 |
Q |
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| T |
19048820 |
aagacggttgagccatgcaccggatttgagtttttgggtaagggattttgttgattgagtgtttggttactgtgttgttttgaactgttcgaaaat |
19048725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 39799990 - 39800026
Alignment:
| Q |
243 |
gtggctgaagctcacacactttatatgtggagaagtg |
279 |
Q |
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| T |
39799990 |
gtggctgaagctcacacattttaaatgtggagaagtg |
39800026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 3161132 - 3161092
Alignment:
| Q |
243 |
gtggctgaagctcacacactttatatgtggagaagtgaagt |
283 |
Q |
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| T |
3161132 |
gtggctgtagctcacacattttaaatgtggagaagtgaagt |
3161092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 28715800 - 28715764
Alignment:
| Q |
243 |
gtggctgaagctcacacactttatatgtggagaagtg |
279 |
Q |
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| T |
28715800 |
gtggctgaagctcacacattttaaatgtggagaagtg |
28715764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 44023595 - 44023631
Alignment:
| Q |
314 |
tattatattatatccatatcaattgagttaaatttac |
350 |
Q |
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| T |
44023595 |
tattatataatatccctatcaattgagttaaatttac |
44023631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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