View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_19 (Length: 462)
Name: NF3231_high_19
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 6 - 455
Target Start/End: Complemental strand, 43513909 - 43513460
Alignment:
| Q |
6 |
atttattgaataactgatgtatctaatataatcatatgatactcaagtgagtaataaataatttataaactattttaatttcatcaaattaatttcttaa |
105 |
Q |
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| T |
43513909 |
atttattgaataactgatgtatctaatataatcatatgatactcaagtgagtaataaataatttataaactattttaatttcatcaaattaatttcttaa |
43513810 |
T |
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| Q |
106 |
ctatatgtgatgcgtttattctttttcattcccttatttgatttctctttcgtattacttctgttgatttattcgtatgattgctctatcttttgcagag |
205 |
Q |
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| T |
43513809 |
ctatatgtgatgcgtttattctttttcattcccttatttgatttctctttcgtattacttctgttgatttattcgtatgattgctctatcttttgcagag |
43513710 |
T |
|
| Q |
206 |
ttgatggtgaagctagttgaattatgtggttcatcagtcacactgaaatgtccattaccaaacggagatttagagacattgatttcaatcaccagcgatg |
305 |
Q |
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| T |
43513709 |
ttgatggtgaagctagttgaattatgtggttcatcagtcacactgaaatgtccattaccaaacggagatttagagacattgatttcaatcaccagcgatg |
43513610 |
T |
|
| Q |
306 |
aagatctgaaaaatataattgaagaatacgatcgcgcttcttcatcattaattcatccattgaagatcagagccattctttcaccgcccaaatcattcaa |
405 |
Q |
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| T |
43513609 |
aagatctgaaaaatataattgaagaatacgatcgagcttcttcatcattaattcatccattgaagatcagagccattctttcaccgcccaaatcattcaa |
43513510 |
T |
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| Q |
406 |
gaaattatctcctcctccgtcttcttcgtccagctcaactcactctctgc |
455 |
Q |
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| T |
43513509 |
gaaattatctcctcctccgtcttcttcgtccagctcaactcactctctgc |
43513460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 34589665 - 34589551
Alignment:
| Q |
196 |
ttttgcagagttgatggtgaagctagttgaattatgtggttcatcagtcacactgaaatgtccattaccaaacggagatttagagacattgatttcaatc |
295 |
Q |
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||||||||| |||||||||||||| | ||||| || |||||||| || || | |||| ||||||||||||||||||||| || |||||||| ||| |
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| T |
34589665 |
ttttgcagaattgatggtgaagcttgaagaattgtgcggttcatctgtgactttacggtgtcaattaccaaacggagatttagaaacgttgatttccatc |
34589566 |
T |
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| Q |
296 |
accagcgatgaagat |
310 |
Q |
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| T |
34589565 |
accaacgatgaagat |
34589551 |
T |
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