View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_high_26 (Length: 398)

Name: NF3231_high_26
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_high_26
NF3231_high_26
[»] chr5 (26 HSPs)
chr5 (143-394)||(30695293-30695545)
chr5 (143-338)||(32485947-32486143)
chr5 (142-394)||(40367517-40367758)
chr5 (143-394)||(40371655-40371892)
chr5 (143-338)||(19502307-19502504)
chr5 (142-338)||(26336767-26336965)
chr5 (143-338)||(36632314-36632497)
chr5 (163-328)||(43384972-43385138)
chr5 (142-296)||(7099374-7099532)
chr5 (142-296)||(12023288-12023446)
chr5 (143-296)||(7103943-7104100)
chr5 (143-296)||(12018731-12018888)
chr5 (142-296)||(16798668-16798826)
chr5 (143-296)||(16794108-16794265)
chr5 (191-324)||(20830304-20830437)
chr5 (143-296)||(10274546-10274698)
chr5 (137-251)||(10277198-10277312)
chr5 (142-394)||(37682035-37682277)
chr5 (143-394)||(37658732-37658973)
chr5 (32-143)||(278578-278689)
chr5 (191-265)||(20808675-20808749)
chr5 (345-394)||(16794310-16794360)
chr5 (345-394)||(16798871-16798921)
chr5 (345-394)||(7099280-7099329)
chr5 (345-394)||(7103849-7103898)
chr5 (267-299)||(5733082-5733114)
[»] chr7 (13 HSPs)
chr7 (142-394)||(27761396-27761649)
chr7 (143-394)||(27756846-27757098)
chr7 (149-394)||(47419483-47419729)
chr7 (143-394)||(22901154-22901407)
chr7 (142-324)||(35705633-35705815)
chr7 (143-338)||(7466485-7466669)
chr7 (156-332)||(733634-733811)
chr7 (142-296)||(7940083-7940241)
chr7 (143-296)||(7944636-7944793)
chr7 (155-315)||(13828087-13828248)
chr7 (342-394)||(7939989-7940041)
chr7 (342-394)||(7944542-7944594)
chr7 (155-251)||(37355573-37355669)
[»] chr8 (23 HSPs)
chr8 (143-394)||(30410235-30410486)
chr8 (143-394)||(28644562-28644813)
chr8 (142-394)||(30405726-30405961)
chr8 (143-338)||(33071918-33072113)
chr8 (143-338)||(42234656-42234851)
chr8 (143-338)||(38757003-38757186)
chr8 (142-296)||(43807485-43807641)
chr8 (143-296)||(43812044-43812199)
chr8 (16-143)||(41806110-41806236)
chr8 (141-296)||(202202-202361)
chr8 (141-296)||(317039-317198)
chr8 (142-296)||(197684-197842)
chr8 (142-296)||(312521-312679)
chr8 (143-239)||(41945339-41945434)
chr8 (142-243)||(41949801-41949902)
chr8 (17-94)||(41800036-41800113)
chr8 (267-321)||(27435169-27435223)
chr8 (346-394)||(197591-197639)
chr8 (346-394)||(202109-202157)
chr8 (346-394)||(312428-312476)
chr8 (346-394)||(316946-316994)
chr8 (364-394)||(43807391-43807421)
chr8 (364-394)||(43811950-43811980)
[»] chr3 (18 HSPs)
chr3 (142-394)||(21847108-21847362)
chr3 (142-394)||(21850198-21850452)
chr3 (143-338)||(9105275-9105470)
chr3 (143-338)||(11004365-11004560)
chr3 (142-338)||(43547722-43547920)
chr3 (143-338)||(9697586-9697783)
chr3 (142-296)||(54171924-54172082)
chr3 (142-296)||(54167344-54167502)
chr3 (143-296)||(39399127-39399279)
chr3 (219-339)||(43554645-43554765)
chr3 (17-143)||(24685192-24685318)
chr3 (204-324)||(755891-756012)
chr3 (142-220)||(43554291-43554371)
chr3 (191-296)||(38175790-38175894)
chr3 (17-75)||(24682519-24682577)
chr3 (17-109)||(24653501-24653595)
chr3 (213-246)||(755824-755857)
chr3 (19-92)||(24631841-24631914)
[»] chr1 (7 HSPs)
chr1 (143-383)||(39793831-39794070)
chr1 (143-394)||(16588383-16588635)
chr1 (142-394)||(26316012-26316251)
chr1 (143-394)||(26311522-26311760)
chr1 (142-338)||(43591783-43591979)
chr1 (142-296)||(10504435-10504588)
chr1 (267-299)||(41879945-41879977)
[»] chr6 (13 HSPs)
chr6 (142-394)||(27552014-27552268)
chr6 (143-383)||(8319960-8320199)
chr6 (142-383)||(8315421-8315662)
chr6 (143-384)||(17779914-17780156)
chr6 (143-338)||(17096236-17096431)
chr6 (141-394)||(27574643-27574886)
chr6 (143-332)||(17895691-17895881)
chr6 (143-338)||(14531749-14531945)
chr6 (142-332)||(17886816-17887001)
chr6 (181-296)||(6440865-6440979)
chr6 (204-245)||(17163689-17163730)
chr6 (208-246)||(7888212-7888250)
chr6 (156-245)||(17159610-17159700)
[»] chr4 (19 HSPs)
chr4 (142-394)||(31670089-31670341)
chr4 (142-338)||(53722006-53722202)
chr4 (143-338)||(10317025-10317220)
chr4 (142-338)||(8892582-8892779)
chr4 (143-338)||(27186142-27186341)
chr4 (136-338)||(43683636-43683826)
chr4 (142-394)||(44151557-44151808)
chr4 (143-296)||(3770842-3770999)
chr4 (143-394)||(44147023-44147273)
chr4 (142-338)||(50627904-50628088)
chr4 (143-296)||(41884925-41885076)
chr4 (239-338)||(35842843-35842942)
chr4 (142-296)||(31359150-31359303)
chr4 (141-296)||(49274517-49274670)
chr4 (143-238)||(31354678-31354772)
chr4 (177-337)||(53785880-53786039)
chr4 (194-246)||(45976222-45976274)
chr4 (170-220)||(35842797-35842847)
chr4 (346-394)||(3771044-3771093)
[»] chr2 (14 HSPs)
chr2 (142-394)||(8055391-8055643)
chr2 (143-394)||(8050839-8051090)
chr2 (143-392)||(6463345-6463583)
chr2 (143-338)||(12999426-12999622)
chr2 (142-296)||(36670502-36670660)
chr2 (142-296)||(36675050-36675208)
chr2 (143-305)||(13270980-13271131)
chr2 (142-296)||(35950443-35950596)
chr2 (143-296)||(41093824-41093976)
chr2 (156-243)||(29767953-29768041)
chr2 (208-296)||(34590280-34590366)
chr2 (341-394)||(36670701-36670755)
chr2 (341-394)||(36675249-36675303)
chr2 (197-234)||(27403696-27403733)
[»] scaffold0044 (2 HSPs)
scaffold0044 (142-394)||(44771-45023)
scaffold0044 (143-394)||(49351-49602)
[»] scaffold0440 (3 HSPs)
scaffold0440 (142-296)||(2979-3137)
scaffold0440 (142-296)||(7505-7662)
scaffold0440 (342-394)||(7704-7757)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 143 - 394
Target Start/End: Original strand, 30695293 - 30695545
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30695293 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 30695392  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30695393 agaggttagtatataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttcgta 30695492  T
Q  343 tgtagaattaataaaggtcaattacaatttcatcataa-ctttcttctctctc 394  Q
    |||||||| ||||||| |||||||||||||||||||||  |||||||||||||    
T  30695493 tgtagaatcaataaagatcaattacaatttcatcataatttttcttctctctc 30695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 143 - 338
Target Start/End: Complemental strand, 32486143 - 32485947
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32486143 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 32486044  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||||||||||||||| || |||||    
T  32486043 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaacctccttagctagacattgtatataagctacctcctttatatatttt 32485947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 142 - 394
Target Start/End: Complemental strand, 40367758 - 40367517
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||            |||||||||    
T  40367758 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgtta------------caagtttgt 40367671  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagc-aacttagctagatattgtatataagctacctcctttgtacatttttg 340  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||      
T  40367670 tagaggctagtagataagatctagagtttgttacattgcttgtgcttcaagcaaacttggttagatattgtatataagctacctcctttgtacattttca 40367571  T
Q  341 tatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    |||||||||| |||||   ||||||||||||||||||||| |||||||||||||    
T  40367570 tatgtagaatcaataagaatcaattacaatttcatcataattttcttctctctc 40367517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 143 - 394
Target Start/End: Complemental strand, 40371892 - 40371655
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  40371892 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagattgttacaagtttgtt 40371793  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    ||||| |||||||||||||||||||||| |||||||| |||||              | |||||||||||||||||||||||||||||||||||||  ||    
T  40371792 agaggctagtagataagatctagagtttattacattgtttgtg--------------gttagatattgtatataagctacctcctttgtacattttcata 40371707  T
Q  343 tgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    |||||||| |||||   |||| |||||||||||||||| |||||||||||||    
T  40371706 tgtagaatcaataagaatcaactacaatttcatcataattttcttctctctc 40371655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 143 - 338
Target Start/End: Original strand, 19502307 - 19502504
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaatt-acattttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||    
T  19502307 tgttagtttgttttaatttaagtttagttttagtgataatcacaatcagtgattaaatcacattttgttttagtttgttatgaagtttgttacaagtttg 19502406  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| || |||||    
T  19502407 ttagaggttagaaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctaaacattgtatataagctacctcctttatatatttt 19502504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 142 - 338
Target Start/End: Complemental strand, 26336965 - 26336767
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||  || ||||| |||||||||||| |||||||||||| |||||||||| ||||    
T  26336965 atgttagtttgttttaattcaagtttaattttagtgataatcacaatcggtgattaatcacattttgtttttagtttgttatgatgtttgttacatgttt 26336866  T
Q  240 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26336865 gttagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 26336767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 143 - 338
Target Start/End: Original strand, 36632314 - 36632497
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||| ||||||||||||            |||||||||||||||    
T  36632314 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacactttgttttagtt------------tgttacaagtttgtt 36632401  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  36632402 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 36632497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 163 - 328
Target Start/End: Original strand, 43384972 - 43385138
Alignment:
Q  163 agtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatc 262  Q
    ||||||||||||||||||||| ||| | |||||||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||| | |||| |||    
T  43384972 agtttagtttagtgataatcataattagtggttaatcacatttgcttttagtttgttatgaagtttgttacaagtttgttagaagttagcaaataaaatc 43385071  T
Q  263 tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat-aagctacctcctt 328  Q
    ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  43385072 tagggtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataaagctacctcctt 43385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 7099532 - 7099374
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7099532 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7099433  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7099432 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7099374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 12023288 - 12023446
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  12023288 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 12023387  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12023388 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 143 - 296
Target Start/End: Complemental strand, 7104100 - 7103943
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7104100 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7104001  T
Q  241 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7104000 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7103943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 143 - 296
Target Start/End: Original strand, 12018731 - 12018888
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  12018731 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 12018830  T
Q  241 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  12018831 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 12018888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 16798668 - 16798826
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  16798668 atgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 16798767  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16798768 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16798826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 143 - 296
Target Start/End: Original strand, 16794108 - 16794265
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  16794108 tgttagtttgttttaattcaagtttagtttcagtgataatcacaataagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 16794207  T
Q  241 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  16794208 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 16794265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 191 - 324
Target Start/End: Complemental strand, 20830437 - 20830304
Alignment:
Q  191 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 290  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| || ||||||||||||||||||||||||    
T  20830437 tggttaatcacatttagtttcagtttgttatgaagtttgttacaagtttgttagagattagcaaataagatcaagtgtttgttacattgcttgtgcttca 20830338  T
Q  291 agcaacttagctagatattgtatataagctacct 324  Q
    ||||||||| ||||| ||||||||||||||||||    
T  20830337 agcaacttaactagacattgtatataagctacct 20830304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 296
Target Start/End: Original strand, 10274546 - 10274698
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  10274546 tgttagtttgttttaattcaagtttagtttagtgataatcacaattaatggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 10274645  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||| ||||   ||||| | ||| ||||||||  | |||||| |||||||||||    
T  10274646 agagattagctcataaggt-tagggtttgttatttagcttgtacttcaagcaac 10274698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 10277198 - 10277312
Alignment:
Q  137 agagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaag 236  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| |||||||||||    
T  10277198 agaggatgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaag 10277297  T
Q  237 tttgttagaggttag 251  Q
    || ||||||| ||||    
T  10277298 ttagttagagattag 10277312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 142 - 394
Target Start/End: Original strand, 37682035 - 37682277
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||           
T  37682035 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgtta------- 37682127  T
Q  240 gttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 337  Q
        |||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||     
T  37682128 ----gaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattc 37682220  T
Q  338 ttgtatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 394  Q
     | |||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  37682221 at-tatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 37682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 143 - 394
Target Start/End: Original strand, 37658732 - 37658973
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||| |||  |||||||||| ||||||||||||||||||            
T  37658732 tgttagtttgttttaattcaagtttagttttagtcataatcataatcagtggttaatcacaagtttgttttagcttgttatgaagtttgtta-------- 37658823  T
Q  241 ttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
       |||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||      
T  37658824 ---gaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattca 37658917  T
Q  339 tgtatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 394  Q
    | |||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  37658918 t-tatgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 37658973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 278578 - 278689
Alignment:
Q  32 tttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaatgtaagatgggcttctatatgc 131  Q
    ||||||||| ||| ||||||||||| ||||||| |||||||||||   |||||||||||||||||| ||||| ||||   | || || ||||||||| ||    
T  278578 tttgattttctgaaattctccttgtcatttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagc 278677  T
Q  132 actgaagagaat 143  Q
    ||||||||||||    
T  278678 actgaagagaat 278689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 20808749 - 20808675
Alignment:
Q  191 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctag 265  Q
    |||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||  | |||||||||||    
T  20808749 tggttaatcacatttagtttcagtttgttatgaagttagttacaagtttgttagaggttaacaaataagatctag 20808675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 16794310 - 16794360
Alignment:
Q  345 tagaattaataaaggtcaattacaattt-catcataactttcttctctctc 394  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  16794310 tagaatcaataaagatcatttacaattttcatcataactttcttctctctc 16794360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 16798871 - 16798921
Alignment:
Q  345 tagaattaataaaggtcaattacaattt-catcataactttcttctctctc 394  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  16798871 tagaatcaataaagatcatttacaattttcatcataactttcttctctctc 16798921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 7099329 - 7099280
Alignment:
Q  345 tagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    |||||| || |||| ||| |||||| ||||||||||||||||||||||||    
T  7099329 tagaatcaaaaaagatcatttacaaattcatcataactttcttctctctc 7099280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 7103898 - 7103849
Alignment:
Q  345 tagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    |||||| || |||| ||| |||||| ||||||||||||||||||||||||    
T  7103898 tagaatcaaaaaagatcatttacaaattcatcataactttcttctctctc 7103849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 5733082 - 5733114
Alignment:
Q  267 gtttgttacattgcttgtgcttcaagcaactta 299  Q
    ||||||||| |||||||||||||||||||||||    
T  5733082 gtttgttactttgcttgtgcttcaagcaactta 5733114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 142 - 394
Target Start/End: Original strand, 27761396 - 27761649
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  27761396 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 27761495  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 341  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27761496 tagaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttat 27761595  T
Q  342 atgtagaattaataaaggtcaattacaa-tttcatcataactttcttctctctc 394  Q
    ||||||||| ||||||| ||| |||||| |||||||||||||||||||||||||    
T  27761596 atgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 27761649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 143 - 394
Target Start/End: Original strand, 27756846 - 27757098
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  27756846 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcgcattctgttttagtttgttatgaagtttgttacaagtttgtt 27756945  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27756946 agaggtttgtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttata 27757045  T
Q  343 tgtagaattaataaaggtcaattacaa-tttcatcataactttcttctctctc 394  Q
    |||||||| ||||||| ||| |||||| |||||||||||||||||||||||||    
T  27757046 tgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 27757098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 149 - 394
Target Start/End: Complemental strand, 47419729 - 47419483
Alignment:
Q  149 tttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggt 248  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47419729 tttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttcttagaggt 47419630  T
Q  249 tagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgtatgtaga 348  Q
    ||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  47419629 tagcagataatatctagagtttgttacattgtttgtgtttcaagcaacttagctagacattgtatataagctacctcctttgtatattttcgtatgtaga 47419530  T
Q  349 attaataaaggtcaattacaatttcatcataacttt-cttctctctc 394  Q
    || ||||||  ||||||||||||||||||||| ||| ||||||||||    
T  47419529 atcaataaaaatcaattacaatttcatcataattttacttctctctc 47419483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 143 - 394
Target Start/End: Original strand, 22901154 - 22901407
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  22901154 tgttagtttgttttaattaaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 22901253  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 340  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  22901254 ttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 22901352  T
Q  341 tatgtagaattaataaaggtca-attacaatttcatcataactttcttctctctc 394  Q
    |||||||||| ||||||| |||  |||||| ||||||||||||||||||||||||    
T  22901353 tatgtagaatcaataaagatcattttacaaattcatcataactttcttctctctc 22901407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 142 - 324
Target Start/End: Original strand, 35705633 - 35705815
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgtt-atgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  35705633 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgtttatggagtttgttacaagtttg 35705732  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacct 324  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  35705733 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaac-cagctagacattgtatataagctacct 35705815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 143 - 338
Target Start/End: Complemental strand, 7466669 - 7466485
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||            |||||||||    
T  7466669 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcaatgattaatcacattttgttttagtttgtta------------caagtttgt 7466582  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  7466581 tagaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 7466485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 156 - 332
Target Start/End: Complemental strand, 733811 - 733634
Alignment:
Q  156 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtag 254  Q
    |||||||||||||| |||||||||||||   | || |||||||| |||| ||   ||||||||||||||| |||||||||| ||||||||||||||| |     
T  733811 taattcaagtttagattagtgataatcatgtttaaatggttaatcacatattcagttagtttgttatgaaatttgttacaattttgttagaggttagcaa 733712  T
Q  255 ataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 332  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  733711 ataagatctagagtttgttacattgcttgtgcttcgagcaacttagctagacattgtatataagctacctcctttgta 733634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 7940241 - 7940083
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  7940241 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 7940142  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7940141 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7940083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 143 - 296
Target Start/End: Complemental strand, 7944793 - 7944636
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  7944793 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 7944694  T
Q  241 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  7944693 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 7944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 315
Target Start/End: Complemental strand, 13828248 - 13828087
Alignment:
Q  155 ttaattcaagtttagtttagtgataatcacaatcaat-ggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagta 253  Q
    ||||||||||||||  |||||||||||||   | | | ||||||| |||||||  ||| ||||||| ||||||||||||||||||||||||||  ||       
T  13828248 ttaattcaagtttaccttagtgataatcatgtttagttggttaatcacattttcattttgtttgttctgaagtttgttacaagtttgttagagtgtatct 13828149  T
Q  254 gataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatat 315  Q
     |||| |  ||| || |||||||||||||||||||||||| || || ||||||| |||||||    
T  13828148 aataatagttagggtctgttacattgcttgtgcttcaagctacctaactagatagtgtatat 13828087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 7940041 - 7939989
Alignment:
Q  342 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  7940041 atgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 7939989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 7944594 - 7944542
Alignment:
Q  342 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    ||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  7944594 atgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 7944542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 37355573 - 37355669
Alignment:
Q  155 ttaattcaagtttagtttagtgataatcacaatcaatggttaattacatt-ttgttttagtttgttatgaagtttgttacaagtttgttagaggttag 251  Q
    ||||||||||||||  | ||||||||||||| | | |||||||| | ||| ||| ||||||||||||||||  ||||||||||||| |||||| ||||    
T  37355573 ttaattcaagtttacct-agtgataatcacacttagtggttaatcatattattgctttagtttgttatgaaagttgttacaagtttcttagagattag 37355669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 143 - 394
Target Start/End: Complemental strand, 30410486 - 30410235
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  30410486 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttaatttgttatgaagtttgttacaagtttgtt 30410387  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  30410386 agaggttagtagataagatctagattttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttata 30410287  T
Q  343 tgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  30410286 tgtagaatcaataaagatcaattacaatttcatcataactttcttctctctc 30410235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 143 - 394
Target Start/End: Original strand, 28644562 - 28644813
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28644562 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 28644661  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |    
T  28644662 agaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacagtgtatataagctacctcctttgtatatttttgca 28644761  T
Q  343 tgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    |||||||| |||||   ||||||||||||||||||||| |||||||||||||    
T  28644762 tgtagaatcaataagaatcaattacaatttcatcataattttcttctctctc 28644813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 142 - 394
Target Start/End: Complemental strand, 30405961 - 30405726
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||                 ||||||||||||||||||||||||||||||||||||    
T  30405961 atgttagtttgttttaattcaagtttagtttagtgataatcacattc-----------------tgttttagtttgttatgaagtttgttacaagtttgt 30405879  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 341  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  30405878 tagaggttagtagataagatctagaatttgttacattgcttgtacttcaagcaacctagctagatattgtatataagctacctcctttgtacatttttat 30405779  T
Q  342 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  30405778 atgtagaatcaataaagatcaattacaatttcatcataactttcttctctctc 30405726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 143 - 338
Target Start/End: Original strand, 33071918 - 33072113
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  33071918 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttcttttagtttgttatgaagtttgttacaagtttgtt 33072017  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
     |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  33072018 ggaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtatatttt 33072113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 143 - 338
Target Start/End: Complemental strand, 42234851 - 42234656
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  42234851 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgttacaagtttgtt 42234752  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||    
T  42234751 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataaactaccttctttgtatatttt 42234656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 143 - 338
Target Start/End: Original strand, 38757003 - 38757186
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  38757003 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 38757090  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||| |||||    
T  38757091 agaggttagtagataagatctagagtttgttacattgcttgtgattcaagcaacctagccagatattgtatataagctacctcctttgtatatttt 38757186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 43807641 - 43807485
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  43807641 atgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgt 43807542  T
Q  242 tagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43807541 tagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 143 - 296
Target Start/End: Complemental strand, 43812199 - 43812044
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  43812199 tgttagcttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtttgttatgaagtttgttacaagtttgtt 43812100  T
Q  243 agaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  43812099 agaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 43812044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 41806236 - 41806110
Alignment:
Q  16 aagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaatgtaag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41806236 aagtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaaga-gaatgttaactgtagaaagaatgtaag 41806138  T
Q  116 atgggcttctatatgcactgaagagaat 143  Q
    | ||||||||||| ||||||||||||||    
T  41806137 acgggcttctataagcactgaagagaat 41806110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 141 - 296
Target Start/End: Complemental strand, 202361 - 202202
Alignment:
Q  141 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 238  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  202361 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 202262  T
Q  239 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  202261 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 202202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 141 - 296
Target Start/End: Complemental strand, 317198 - 317039
Alignment:
Q  141 aatgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtt 238  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||    
T  317198 aatgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtt 317099  T
Q  239 tgttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  317098 tgttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 317039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 197842 - 197684
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  197842 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 197743  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  197742 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 312679 - 312521
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  312679 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 312580  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  312579 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 312521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 41945339 - 41945434
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||  ||||| |||||||||||    
T  41945339 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacactttgttttagtttgtta-caagttggttacaagttt 41945434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 41949801 - 41949902
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| || ||||| ||| | |||||||||||||| |||||||||||||||||| ||    
T  41949801 atgttagtttcttttaattcaagcttagtttagtgataatcacaatcagtgattaatcacactctgttttagtttgttttgaagtttgttacaagttggt 41949900  T
Q  242 ta 243  Q
    ||    
T  41949901 ta 41949902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 41800113 - 41800036
Alignment:
Q  17 agtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgt 94  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||||||| |||||||    
T  41800113 agtttatggtttgtgtttgattttgttagattctcctggttatttgattttataggtcccgaagaacaaggggaatgt 41800036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 27435223 - 27435169
Alignment:
Q  267 gtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagcta 321  Q
    ||||||||||| |||||||||||||||||| ||  ||||||||||||||||||||    
T  27435223 gtttgttacatagcttgtgcttcaagcaacctaagtagatattgtatataagcta 27435169  T

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Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 197639 - 197591
Alignment:
Q  346 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  197639 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 202157 - 202109
Alignment:
Q  346 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  202157 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 202109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 312476 - 312428
Alignment:
Q  346 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  312476 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 312428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 316994 - 316946
Alignment:
Q  346 agaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  316994 agaatcaataaagatcatttacaatttcatcataactttcttctctctc 316946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 394
Target Start/End: Complemental strand, 43807421 - 43807391
Alignment:
Q  364 ttacaatttcatcataactttcttctctctc 394  Q
    |||||||||||||||||||||||||||||||    
T  43807421 ttacaatttcatcataactttcttctctctc 43807391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 394
Target Start/End: Complemental strand, 43811980 - 43811950
Alignment:
Q  364 ttacaatttcatcataactttcttctctctc 394  Q
    |||||||||||||||||||||||||||||||    
T  43811980 ttacaatttcatcataactttcttctctctc 43811950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 142 - 394
Target Start/End: Original strand, 21847108 - 21847362
Alignment:
Q  142 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21847108 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21847207  T
Q  240 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 339  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21847208 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21847307  T
Q  340 gtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  21847308 gtatatagaatcaataaagatcatttacaatttcatcataactttcttctctctc 21847362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 142 - 394
Target Start/End: Original strand, 21850198 - 21850452
Alignment:
Q  142 atgttagtttgtttt-aattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  21850198 atgttagtttgtttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagttt 21850297  T
Q  240 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 339  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21850298 gttagaggttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt 21850397  T
Q  340 gtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  21850398 gtatatagaatcaataaagatcatttacaatttcatcataactttcttctctctc 21850452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 143 - 338
Target Start/End: Original strand, 9105275 - 9105470
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||    
T  9105275 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatgattaatcacattttgctttagtttgttatgaagtatgttacaagtttgtt 9105374  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||  | |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||| |||||    
T  9105375 agaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacctaactagacattgtatatgagctacctcctttgtatatttt 9105470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 143 - 338
Target Start/End: Complemental strand, 11004560 - 11004365
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||| ||||||||||| ||||||||||||||||    
T  11004560 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgaataatcacattttgttttagcttgttatgaagattgttacaagtttgtt 11004461  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  11004460 agaggttagcaaataagatctagagtttgttacattgtttgtgcttcaagcaacctagctagacattgtatataagctacctcctttgtatatttt 11004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 142 - 338
Target Start/End: Original strand, 43547722 - 43547920
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagttt 239  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  43547722 atgttagcttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacattttgtttttagtttgttatgaagtttgttacaagttt 43547821  T
Q  240 gttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||    
T  43547822 gttagaggttaacaaataagatctagagtttgttacattgcttgtgcttcaagcaacttagcaagacattgtatataagctatctcctttgtatatttt 43547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 143 - 338
Target Start/End: Original strand, 9697586 - 9697783
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt-agtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| |||||||||||| |||||||||||||||||||||||||||||    
T  9697586 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgtttttagtttgttatgaagtttgttacaagtttg 9697685  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  9697686 ttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 9697783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 54172082 - 54171924
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54172082 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54171983  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  54171982 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 54171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 54167502 - 54167344
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  54167502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 54167403  T
Q  240 gttagaggttagtagataa--gatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||  | ||||  |   ||||||||||||||||||||||||||||||||||    
T  54167402 gttagaggttaccaaataagggtgttagagtttgttacattgcttgtgcttcaagcaac 54167344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 296
Target Start/End: Complemental strand, 39399279 - 39399127
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  39399279 tgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagtt 39399180  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  39399179 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 39399127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 43554645 - 43554765
Alignment:
Q  219 tatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataag 318  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||||| || ||||||||||||||  ||| ||||||||| ||    
T  43554645 tatgaagtttgttacaagtttgttagaggttaacaaataagatctagagtttattacattgcttctgtttcaagcaacttagtaagacattgtatatgag 43554744  T
Q  319 ctacctcctttgtacattttt 339  Q
    ||||||| |||||| ||||||    
T  43554745 ctacctcttttgtatattttt 43554765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 24685318 - 24685192
Alignment:
Q  17 agtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaatgtaaga 116  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||   |||||||||||||||||| || |  |||||| | |||    
T  24685318 agtttatggtttgtgtttgattttgtgagattcttctggttatttgattttataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgaga 24685219  T
Q  117 tgggcttctatatgcactgaagagaat 143  Q
    || | || |||| |||| |||||||||    
T  24685218 tgtggttttataagcacagaagagaat 24685192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 755891 - 756012
Alignment:
Q  204 tttgttttagtttgttatgaagtttgttacaagtttgttagag-gttagtagataaga-tctagagtttgttacattgcttgtgcttcaagcaacttagc 301  Q
    |||||||||||||||| |||||||||||||||||||||||||| || | || |||| |   ||| ||||||||||||||||||||||||||| || || |    
T  755891 tttgttttagtttgttttgaagtttgttacaagtttgttagagtgtaacta-ataaaaggttagggtttgttacattgcttgtgcttcaagctacctaac 755989  T
Q  302 tagatattgtatataagctacct 324  Q
    |||||  ||||||||||||||||    
T  755990 tagatggtgtatataagctacct 756012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 43554291 - 43554371
Alignment:
Q  142 atgttagtttgttttaattcaagtttag-tttagtgataatcacaatcaatggttaattacattttg-ttttagtttgtta 220  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || ||| | |||||||| |||||||||||||    
T  43554291 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattagtcacattttgtttttagtttgtta 43554371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 38175894 - 38175790
Alignment:
Q  191 tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttca 290  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||| ||||||| ||||   ||||||| ||| ||||||||| | |||||| |||||    
T  38175894 tggttaatcacatttagtttcagtttgttatgaattttgttacaagttagttagagattagctcataagat-tagggtttgttacttagcttgtacttca 38175796  T
Q  291 agcaac 296  Q
    ||||||    
T  38175795 agcaac 38175790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 24682577 - 24682519
Alignment:
Q  17 agtttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcc 75  Q
    ||||||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||||    
T  24682577 agtttattgtttgcgtttgattttatgagattctcctggttctttgattttataggtcc 24682519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 24653595 - 24653501
Alignment:
Q  17 agtttatggtttgtgtttgattttgtg--agattctccttgttatttgattttataggtcccgcggaacaagaggaatgttaactgtagaaagaa 109  Q
    ||||||| || ||||||||||||| ||  |||||||||| ||| |||||||||||||||||    |||  ||||||||||||| ||||| |||||    
T  24653595 agtttattgtgtgtgtttgattttatgcgagattctcctggttctttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaa 24653501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 755824 - 755857
Alignment:
Q  213 gtttgttatgaagtttgttacaagtttgttagag 246  Q
    ||||||| ||||||||||||||||||||||||||    
T  755824 gtttgttttgaagtttgttacaagtttgttagag 755857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 24631914 - 24631841
Alignment:
Q  19 tttatggtttgtgtttgattttgtgagattctccttgttatttgattttataggtcccgcggaacaagaggaat 92  Q
    |||||||| ||| || |||||||||||||| |||  |||||||||||||||  |||||   |||||||||||||    
T  24631914 tttatggtctgttttcgattttgtgagattatcccggttatttgattttattagtcccaaagaacaagaggaat 24631841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 143 - 383
Target Start/End: Original strand, 39793831 - 39794070
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  39793831 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatctcattctgttttagtttgttatgaagtttgttacaagtttgtt 39793930  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  39793931 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcata 39794029  T
Q  343 tgtagaattaataaaggtcaattacaatttcatcataactt 383  Q
    |||||||| ||||||| ||||||||| ||||||||||||||    
T  39794030 tgtagaatcaataaagatcaattacattttcatcataactt 39794070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 143 - 394
Target Start/End: Complemental strand, 16588635 - 16588383
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16588635 tgttagtttgttttaattcaagtttagtttagtgataatcacaataagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 16588536  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    ||||||||  | ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  16588535 agaggttatcatataagatctagagtttgttacattgcttgtgttttaagcaacttagctagacattgtatataagctacctcctttgtatatttttgta 16588436  T
Q  343 tgtagaattaataaaggtcaattacaatttcatcataac-tttcttctctctc 394  Q
    || ||||| |||||   |||||||||||||||||||||| |||||||||||||    
T  16588435 tggagaatcaataagaatcaattacaatttcatcataacttttcttctctctc 16588383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 142 - 394
Target Start/End: Original strand, 26316012 - 26316251
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            ||||||||||||||    
T  26316012 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgt 26316099  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||    
T  26316100 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgt 26316198  T
Q  342 atgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  26316199 atgcagaatcaataaagatcaattacaatttcatcataactttcttctctctc 26316251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 143 - 394
Target Start/End: Original strand, 26311522 - 26311760
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||            |||||||||||||||    
T  26311522 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctgttttagtt------------tgttacaagtttgtt 26311609  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||    
T  26311610 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctacttcctttgtata-ttttgta 26311708  T
Q  343 tgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    || ||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  26311709 tgcagaatcaataaagatcaattacaatttcatcataactttcttctctctc 26311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 142 - 338
Target Start/End: Complemental strand, 43591979 - 43591783
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||  || ||| ||||||||||||||||||||||||||||  ||||    
T  43591979 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcgcactttattttagtttgttatgaagtttgttacaatattgt 43591880  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    |||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  43591879 tagaggttagcaaataaaatctagagtttgttacattgcttgtgcttcaagcaacttggctagacattgtatataagctacctcctttgtatatttt 43591783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 10504435 - 10504588
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || ||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  10504435 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtgattaatcacatttagattcagtttgttatgaattttgttacaagttagt 10504534  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  10504535 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 10504588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 41879945 - 41879977
Alignment:
Q  267 gtttgttacattgcttgtgcttcaagcaactta 299  Q
    ||||||||| |||||||||||||||||||||||    
T  41879945 gtttgttactttgcttgtgcttcaagcaactta 41879977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 142 - 394
Target Start/End: Complemental strand, 27552268 - 27552014
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  27552268 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaggtttgt 27552169  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt-g 340  Q
    || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27552168 taaacgttagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttcg 27552069  T
Q  341 tatgtagaattaataaaggtcaattacaatttcatcataac-tttcttctctctc 394  Q
    |||| ||||| |||||   |||||||||||||||||||||| |||||||||||||    
T  27552068 tatggagaatcaataagaatcaattacaatttcatcataacttttcttctctctc 27552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 143 - 383
Target Start/End: Complemental strand, 8320199 - 8319960
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||    
T  8320199 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaatatgttttagtttgttatgaagtttgttacaagtttgtt 8320100  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||    
T  8320099 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagaaacttagctagatattgtatataagctacctcctttgtacatttct-ta 8320001  T
Q  343 tgtagaattaataaaggtcaattacaatttcatcataactt 383  Q
    |||||||| ||||||| |||||| || ||||||||||||||    
T  8320000 tgtagaatcaataaagatcaatttcattttcatcataactt 8319960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 142 - 383
Target Start/End: Complemental strand, 8315662 - 8315421
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  8315662 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 8315563  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  8315562 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttca 8315464  T
Q  341 tatgtagaattaataaaggtcaattacaatttcatcataactt 383  Q
    |||||||||| ||||||| |||||| || ||||||||||||||    
T  8315463 tatgtagaatcaataaagatcaatttcattttcatcataactt 8315421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 143 - 384
Target Start/End: Original strand, 17779914 - 17780156
Alignment:
Q  143 tgttagtttgtttt-aattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  17779914 tgttagtttgttttgaattcaagtttagtttagtgataatcacaatcagagattaatcacattttgttttagtttgttatgaagtttgttaaaagtttgt 17780013  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 341  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  17780014 tagaggctagtagataagatttagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctatctcctttgtacattttcgt 17780113  T
Q  342 atgtagaattaataaaggtcaattacaatttcatcataacttt 384  Q
    ||||||||| |||||   |||||||||||||||||||||||||    
T  17780114 atgtagaatcaataagaatcaattacaatttcatcataacttt 17780156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 143 - 338
Target Start/End: Complemental strand, 17096431 - 17096236
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17096431 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaagtttgtt 17096332  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17096331 agaggttagcagataagatctatagtttgttacattgcttgtgcttcaagcaacttagctagacattgtatataagctacctcctttgtacatttt 17096236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 141 - 394
Target Start/End: Complemental strand, 27574886 - 27574643
Alignment:
Q  141 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||            
T  27574886 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgtta-------- 27574795  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattttt- 339  Q
       |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  27574794 ---gaggttagcagataagatctaaagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgaacatttttc 27574698  T
Q  340 gtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    ||||| | ||| |||||   ||||||||||||||| ||||| |||  ||||||||    
T  27574697 gtatggaaaatcaataagaatcaattacaatttcaccataatttttctctctctc 27574643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 143 - 332
Target Start/End: Complemental strand, 17895881 - 17895691
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  17895881 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttattttagtttgttctgaagtttgttacaagtttgt 17895782  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 332  Q
    |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  17895781 tagaggttagcaaataagatctagaatttgttacattgcttgtgcttcaagcaacttagctaggcattgtatataagctacctcctttgta 17895691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 143 - 338
Target Start/End: Complemental strand, 14531945 - 14531749
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  14531945 tgttagtttgttttaattcaagtttagttttagttataatcacaatcaatgattaatcacattttgttttagttcgttatgaagtttgttacaggtttgt 14531846  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||| |||||||| |||||    
T  14531845 tagaggttagcaaataagatctagagtttgttacattgcttgtgcttgaagcaacttagctagacattgtatatactctaccacctttgtatatttt 14531749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 142 - 332
Target Start/End: Complemental strand, 17887001 - 17886816
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||| ||||       |||||||    
T  17887001 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttataaagta------aagtttg 17886908  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgta 332  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  17886907 ttagaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcagcttagctagacattgtatataagctacctcctttgta 17886816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 6440979 - 6440865
Alignment:
Q  181 tcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgc 280  Q
    ||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||||||| ||||   ||||| | ||| ||||||||| | ||    
T  6440979 tcacaattagtggttaatcacatttagattcagtttgttatgaattttgttacaagttagttagagattagctcataaggt-tagggtttgttacttagc 6440881  T
Q  281 ttgtgcttcaagcaac 296  Q
    |||| |||||||||||    
T  6440880 ttgtacttcaagcaac 6440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 17163689 - 17163730
Alignment:
Q  204 tttgttttagtttgttatgaagtttgttacaagtttgttaga 245  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  17163689 tttgttttagtttgttttgaagtttgttacaagttggttaga 17163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 7888250 - 7888212
Alignment:
Q  208 ttttagtttgttatgaagtttgttacaagtttgttagag 246  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7888250 ttttagtttgttttgaagtttgttacaactttgttagag 7888212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 17159610 - 17159700
Alignment:
Q  156 taattcaagtttagtttagtgataatcacaatcaatgg-ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttaga 245  Q
    |||||||||||||| |||||||||||||  || | | | || || | | |||||||||||||||| ||| |||||||||||||| ||||||    
T  17159610 taattcaagtttagattagtgataatcatgattagttgattgatcatactttgttttagtttgttttgacgtttgttacaagttggttaga 17159700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 142 - 394
Target Start/End: Original strand, 31670089 - 31670341
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  31670089 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacagtttgttttagtttgttatgaagtttgttacaagtttg 31670188  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttg 340  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | |||||    
T  31670189 ttagaggttagcagataagatctagagtttgttacattgcttctgcttcaagcaacttagctagacattgtatataagctacctcctttgtata-ttttg 31670287  T
Q  341 tatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
     ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  31670288 aatgtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 31670341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 142 - 338
Target Start/End: Original strand, 53722006 - 53722202
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53722006 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 53722105  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53722106 tagaggctagcagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctatatattgtatataagctacctcctttgtacatttt 53722202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 143 - 338
Target Start/End: Complemental strand, 10317220 - 10317025
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  10317220 tgttagtttgttttaattcaagtttagtttagttataatcacaatcagtgattaatcacactttgttgtagtttgttatgaagtttgttacaagtttgtt 10317121  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  10317120 agaggttagcaaataagatctagagtttgttacattgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 10317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 142 - 338
Target Start/End: Complemental strand, 8892779 - 8892582
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  8892779 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacattttgttttagtttgttatgaagtttgttacaaatttg 8892680  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    |||||| |||| | ||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  8892679 ttagagattagcaaataagatatagagtttgttacatcgcttgtgcttcaagcaacttaactagacattgtatataagctacctcctttgtatatttt 8892582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 143 - 338
Target Start/End: Original strand, 27186142 - 27186341
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgtttt--agttt-gttatgaagtttgttacaagtt 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||||  ||||| ||||||||||||||||||||||    
T  27186142 tgttagtttgttttaattcaagtttagttttagtgataatcacaattagtgattaatcacattttgttttttagttttgttatgaagtttgttacaagtt 27186241  T
Q  239 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |||||    
T  27186242 tgttagaggttagcaaataagatctagagtttgtaacattgcttgtgcttcaagaaacttagctagacattgtatataagctgcctcctttgtatatttt 27186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 136 - 338
Target Start/End: Complemental strand, 43683826 - 43683636
Alignment:
Q  136 aagagaatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaa 235  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||       
T  43683826 aagacaatgttagtt-gttttaattcaagtttattttagtgataatcacaatcagtgattaatcacactttgttttagtttgttatgaagtttgtta--- 43683731  T
Q  236 gtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacat 335  Q
            |||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||    
T  43683730 --------gaggttagcaaataagatatagagtttgttacattgtttgtgcttcaagcaacttagctagacattgtatataagctacatcctttgtatat 43683639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 394
Target Start/End: Original strand, 44151557 - 44151808
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  44151557 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44151656  T
Q  240 gttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 337  Q
    |||||||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||     
T  44151657 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattc 44151753  T
Q  338 ttgtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
     |  | ||||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  44151754 at--aagtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 44151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 143 - 296
Target Start/End: Original strand, 3770842 - 3770999
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  3770842 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 3770941  T
Q  241 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3770942 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3770999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 143 - 394
Target Start/End: Original strand, 44147023 - 44147273
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  44147023 tgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 44147122  T
Q  241 ttagaggttagtagataagatc--tagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||      
T  44147123 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgtt--tagac-ttgtatataagaccattatcttgtacattca 44147219  T
Q  339 tgtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    |  | ||||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  44147220 t--aagtagaatcaataaagatcatttacaatttcatcataactttcttctctctc 44147273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 142 - 338
Target Start/End: Complemental strand, 50628088 - 50627904
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    ||||||||||||||||||||||| ||||||| |||| |||||||||||| || ||||| || |||| |||||||||||||            ||||||||    
T  50628088 atgttagtttgttttaattcaagattagttttagtg-taatcacaatcagtgattaatcacttttttttttagtttgtta------------caagtttg 50628002  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  50628001 ttagaggttagcaaataagatctagagtttgttacattgcttgtacttcaagcaacttagctagacattgtatataagctacctcctttatatatttt 50627904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 143 - 296
Target Start/End: Original strand, 41884925 - 41885076
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |||    
T  41884925 tgttggtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttagtt 41885023  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||| ||||   ||||||| ||| ||||||||| | |||||| |||||||||||    
T  41885024 agagattagctcataagat-tagggtttgttacttagcttgtacttcaagcaac 41885076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 239 - 338
Target Start/End: Original strand, 35842843 - 35842942
Alignment:
Q  239 tgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||    
T  35842843 tgttagaggttagcaaataagatctagagtttgttacaatgcttgtgcttcaagcaacttagttagacattgtatataaactacctcctttgtatatttt 35842942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 31359150 - 31359303
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| |||||| | || |||||| |||||| ||||||||||||| ||    
T  31359150 atgttagtttgttttaattcaagtttagtttaatgataatcacaattagtggttaatcacatttagattcagtttgctatgaattttgttacaagttagt 31359249  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  31359250 tagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 31359303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 141 - 296
Target Start/End: Complemental strand, 49274670 - 49274517
Alignment:
Q  141 aatgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| |    
T  49274670 aatgttagtttgttttaattcaagtttagtttagtgatgatcataattagtggttaatcacatttagattcagtttgttatgaa-tttgttacaagttag 49274572  T
Q  241 ttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  49274571 ttagagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 49274517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 31354678 - 31354772
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtt 238  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| | |||||||| |||||| | || || |||||||||| |||||||||||||    
T  31354678 tgttagtttgttttaatttaagtttagtttagtgataattacaattagtggttaatcacatttagattcag-ttgttatgaattttgttacaagtt 31354772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 53785880 - 53786039
Alignment:
Q  177 ataatcacaatcaatggttaattacattt--tgttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgtta 274  Q
    ||||||||| ||| |||||||| ||||||  |||||| |||||||| ||| ||||||||||||||||||||   |||   |||   | ||| ||||||||    
T  53785880 ataatcacactcagtggttaatcacatttagtgtttttgtttgttaagaa-tttgttacaagtttgttagaaactagcttatatagt-tagggtttgtta 53785977  T
Q  275 cattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 337  Q
    ||| |||||||||||||||||| || |||| | | ||||||||||||||| ||||||||||||    
T  53785978 catagcttgtgcttcaagcaacctaactagttctagtatataagctacct-ctttgtacattt 53786039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 45976274 - 45976222
Alignment:
Q  194 ttaattacattttgttttagtttgttatgaagtttgttacaagtttgttagag 246  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  45976274 ttaatcacatcttgttttagtttgttttgaagtttgttacaagttttttagag 45976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 35842797 - 35842847
Alignment:
Q  170 tttagtgataatcacaatcaatggttaattacattttgttttagtttgtta 220  Q
    |||||||||||||||||||| || ||||| ||| ||||||||||| |||||    
T  35842797 tttagtgataatcacaatcagtgattaatcacactttgttttagtatgtta 35842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 3771044 - 3771093
Alignment:
Q  346 agaattaataaaggtcaattacaattt-catcataactttcttctctctc 394  Q
    ||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  3771044 agaatcaataaagatcatttacaattttcatcataactttcttctctctc 3771093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 142 - 394
Target Start/End: Original strand, 8055391 - 8055643
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||||    
T  8055391 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttgcaagtttgt 8055490  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |    
T  8055491 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtaca-tttcat 8055589  T
Q  342 atgtagaattaataaaggtcaattacaa-tttcatcataactttcttctctctc 394  Q
    ||||||||| ||||||| ||  |||||| |||||||||||||||||||||||||    
T  8055590 atgtagaatcaataaagatcttttacaattttcatcataactttcttctctctc 8055643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 143 - 394
Target Start/End: Original strand, 8050839 - 8051090
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  8050839 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattctattttagtttgttatgaagtttgttacaagtttgtt 8050938  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||  ||    
T  8050939 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacctagctagatattgtatataagctgcctcctttgtaca-tttcata 8051037  T
Q  343 tgtagaattaataaaggtcaattacaa-tttcatcataactttcttctctctc 394  Q
    |||||||| ||||||| ||  |||||| |||||||||||||||||||||||||    
T  8051038 tgtagaatcaataaagatcttttacaattttcatcataactttcttctctctc 8051090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 143 - 392
Target Start/End: Complemental strand, 6463583 - 6463345
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||            ||||||||||    
T  6463583 tgttagtttgtcttaattcaagtttagtttagtgataatcacaatcagtggttaatcacattttgttttagtttgtta------------caagtttgtt 6463496  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttttgta 342  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  6463495 agaggttagtagataagatctagagtttgttacattatttgtgcttcaagcaacctagctagatattgtatataagctacctcctttgtacattttagta 6463396  T
Q  343 tgtagaattaataaaggtcaattacaatttcatcataac-tttcttctctc 392  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||    
T  6463395 tgtagaatcaataaagatcaattacaatttcatcataacttttcttctctc 6463345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 143 - 338
Target Start/End: Complemental strand, 12999622 - 12999426
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12999622 tgttagtttgttttaatttaagtttagttttagtgataataacaatcagtggttaatcacattttgttttagtttgttatgaagtttgttacaagtttgt 12999523  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  12999522 tagaggttagcagataagatctagagtttgttacattacttgtgcttcaagcaacttagctagacattgtatataagctatctcctttgtatatttt 12999426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 36670502 - 36670660
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36670502 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36670601  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36670602 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36670660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 36675050 - 36675208
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  36675050 atgttagtttgttttaattcaagtttagtttcagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 36675149  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  36675150 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 36675208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 305
Target Start/End: Complemental strand, 13271131 - 13270980
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||| ||||||||||||||            ||||||||    
T  13271131 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaattacactttattttagtttgttat------------aagtttgt 13271044  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaacttagctaga 305  Q
    |||||||||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  13271043 tagaggttagtaaataagatctaaagtttgttacattgtttttgcttcaagcaacttagctaga 13270980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 296
Target Start/End: Complemental strand, 35950596 - 35950443
Alignment:
Q  142 atgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgt 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||| | || ||||||||||||| ||||||||||||| ||    
T  35950596 atgttagtttgttttaattcaagtttagtttagtgataatcacaattagtggttaatcacatttaggttcagtttgttatgaattttgttacaagttagt 35950497  T
Q  242 tagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||| ||||    |||| | ||| ||||||||| | |||||| |||||||||||    
T  35950496 tagagattagctcgtaaggt-tagggtttgttacttagcttgtacttcaagcaac 35950443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 296
Target Start/End: Original strand, 41093824 - 41093976
Alignment:
Q  143 tgttagtttgttttaattcaagtttagtttagtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtt 242  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| | || ||||| | |||| | || ||||||||||||| |||||||||| || |||    
T  41093824 tgttggtttgttttaattcaaatttagtttagtgataatcacaattagtgattaatcatatttagattcagtttgttatgaattttgttacaaattagtt 41093923  T
Q  243 agaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||| ||||   ||||| | ||| ||||||||| | |||||| |||||||||||    
T  41093924 agagattagctcataaggt-tagggtttgttacttagcttgtacttcaagcaac 41093976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 29767953 - 29768041
Alignment:
Q  156 taattcaagtttagtttagtgataatcacaatcaa-tggttaattacattttgttttagtttgttatgaagtttgttacaagtttgtta 243  Q
    ||||||||||||||||||||||||||||  || || || || || ||| |||||||||||||||| | |||||||||||||||| ||||    
T  29767953 taattcaagtttagtttagtgataatcatgattaattgattgatcacactttgttttagtttgttttaaagtttgttacaagttggtta 29768041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 34590280 - 34590366
Alignment:
Q  208 ttttagtttgttatgaagtttgttacaagtttgttagaggttagtagataagatctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| | || |||  ||| |||||||| || |||||||||| |||||||    
T  34590280 ttttagtttgttatgaa-tttgttacaagtttgttagagattagcatat-agagttagggtttgttatatagcttgtgctttaagcaac 34590366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 36670701 - 36670755
Alignment:
Q  341 tatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 394  Q
    ||| |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  36670701 tatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 36670755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 394
Target Start/End: Original strand, 36675249 - 36675303
Alignment:
Q  341 tatgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 394  Q
    ||| |||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  36675249 tatatagaatcaataaagatcatttacaattttcatcataactttcttctctctc 36675303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 27403733 - 27403696
Alignment:
Q  197 attacattttgttttagtttgttatgaagtttgttaca 234  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  27403733 attacactttgttttagtttgttttgaagtttgttaca 27403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 142 - 394
Target Start/End: Complemental strand, 45023 - 44771
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  45023 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 44924  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacattt 337  Q
    |||||||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||     
T  44923 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttaga-cttgtatataagaccattatcttgtacattc 44827  T
Q  338 ttgtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
     | |||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  44826 at-tatgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 44771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 143 - 394
Target Start/End: Complemental strand, 49602 - 49351
Alignment:
Q  143 tgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  49602 tgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagtttg 49503  T
Q  241 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaacttagctagatattgtatataagctacctcctttgtacatttt 338  Q
    ||||||||||| | ||||| |   |||||||||||||||||||||||||||||||||| |   ||||  |||||||||||     |   |||||||||      
T  49502 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaacgt--ttaga-cttgtatataagaccattatcttgtacattca 49406  T
Q  339 tgtatgtagaattaataaaggtcaattacaatttcatcataactttcttctctctc 394  Q
    | |||||||||| ||||||| ||| |||||| ||||||||||||||||||||||||    
T  49405 t-tatgtagaatcaataaagatcatttacaaattcatcataactttcttctctctc 49351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 2979 - 3137
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacat-tttgttttagtttgttatgaagtttgttacaagttt 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  2979 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtggttaatcacaagtttgttttagtttgttatgaagtttgttacaagttt 3078  T
Q  240 gttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    |||||||||||| | ||||| |   ||||||||||||||||||||||||||||||||||    
T  3079 gttagaggttagcaaataaggttgttagagtttgttacattgcttgtgcttcaagcaac 3137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 7505 - 7662
Alignment:
Q  142 atgttagtttgttttaattcaagtttagttt-agtgataatcacaatcaatggttaattacattttgttttagtttgttatgaagtttgttacaagtttg 240  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||    
T  7505 atgttagtttgttttaattcaagtttagttttagtgataatcacaatcagtgattaatcacaatttgttttagtttgttatgaagtttgttacaagtttg 7604  T
Q  241 ttagaggttagtagataagat--ctagagtttgttacattgcttgtgcttcaagcaac 296  Q
    ||||||||||| | ||||| |   ||||||||||||||||||||||| ||||||||||    
T  7605 ttagaggttagcaaataaggttgttagagtttgttacattgcttgtgtttcaagcaac 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 7704 - 7757
Alignment:
Q  342 atgtagaattaataaaggtcaattacaattt-catcataactttcttctctctc 394  Q
    ||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  7704 atgtagaatcaataaagatcatttacaattttcatcataactttcttctctctc 7757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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