View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_28 (Length: 396)
Name: NF3231_high_28
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 11103645 - 11104015
Alignment:
| Q |
1 |
tacgccatataagcttccgtcgcttctttatgaagctccgtgagcacaatccttccctcactcctctttacaacatcactactaccgttatccacaacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11103645 |
tacgccatataagcttccgtcgcttctttatgaagctcagtaagcacaatccttccctcactcctctttacaacatcactactaccgttatccacaaccg |
11103744 |
T |
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| Q |
101 |
tcacgcttccatttccgtctcgctctggttcatcccgccgaacggaagcagcggcagccttgatggaagtggagggacggcgtcgggtggaggcggagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11103745 |
tcacgcttccatttccgtctcgctctggttcatcccgccgaacggaagcagcggcagccttgatggaagtggagggacggcgtcgggtggaggcggagag |
11103844 |
T |
|
| Q |
201 |
gaatcggaggtcggaggtagtgcggcggagaaaggagaggcgtgtggtgggagtgaaaggggagagtgtgaggagtcggagtcggagtgcggaagagaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11103845 |
gaatcggaggtcggaggtagtgcggcggagaaaggagaggcgtgtggtgggagtgaaaggggagagtgtga------ggagtcggagtgcggaagagaat |
11103938 |
T |
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| Q |
301 |
gccatggaggaagaagaagatgacgaaggttgcatagggtttagggttttgacattggagagtgtgttagggatttt |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11103939 |
gccatggaggaagaagaagatgacgaaggttgcatagggtttagggttttgacattggagagtgtgttagggatttt |
11104015 |
T |
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