View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_3 (Length: 753)
Name: NF3231_high_3
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 5 - 597
Target Start/End: Original strand, 28634223 - 28634831
Alignment:
| Q |
5 |
ggacatcatcaatttaataaaaaagtatactatcgtactatactacactaagtatatatagt--------ccaaaggacattatcaattcaaaaacattt |
96 |
Q |
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| T |
28634223 |
ggacatcatcaatttaataaaaaagaatactatcgtactatactacactaagtatatatagtattatagtccaaaggacattatcaattcaaaaacattt |
28634322 |
T |
|
| Q |
97 |
ctatatttcttcatatattttattcgttttgctctcatgtatctgaa--tctatgatcctttgtgtttcaaggtatctcacggtcactatgagattaaac |
194 |
Q |
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| T |
28634323 |
ctatattt-ttcatatattttattcgttttgctctcatgtatatgtagatctatgatcctttgtgttttaaggtatctcacggtcactatgagattaaac |
28634421 |
T |
|
| Q |
195 |
ctcaagttggtagcgagatcttctgagcaactctaaagattgaacacaaattctttttatagagaagagtcatgttgtcaactctctcaacgccatgttg |
294 |
Q |
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| T |
28634422 |
ctcaagttggtagcgagatcttcagagcgactctaaagattgaacacaaattctttttgtagagaagagtcatgttgtcaactctctcaacaccatgttg |
28634521 |
T |
|
| Q |
295 |
attcttaaaaacatttaacgtggatagttaagtgatttattcccactaaatat-aaaaaattacacttcaataaatttaacctaggtttttacatgaaac |
393 |
Q |
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| T |
28634522 |
attcttaaaaacatttaatgtggatagttaaatgattttttcccactaaatataaaaaaattacacttcaataaatttaacctaggtttttacatgaaac |
28634621 |
T |
|
| Q |
394 |
nnnnnnnnnnnnnttgcattcaactaaagttttaatattaatcaaacatacaatcataatttacttcacaatagttattgtggggcggtaacatg----- |
488 |
Q |
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| T |
28634622 |
---aaaaaaaaaattgcatttaactaaagttttaatattaatcaaacatacaatcataatttacttcacaatagttattgtggggcggtaacatgctata |
28634718 |
T |
|
| Q |
489 |
----ctatatccacacgcgtgaagtgaagaatgtcaaagaaagttgcttagtggaggagagtgttctgctcaaattaggcttttgttttactctttcttc |
584 |
Q |
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| T |
28634719 |
tccactatatccacaagcgtgtagtgaagaatgtcaaagaaagttgcttagtggaggagagtgttctgctcaaattaggcttttgttttactctttcttc |
28634818 |
T |
|
| Q |
585 |
ccaaatggcacac |
597 |
Q |
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||||||||||||| |
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| T |
28634819 |
ccaaatggcacac |
28634831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 633 - 733
Target Start/End: Original strand, 28634867 - 28634967
Alignment:
| Q |
633 |
gttgtgccctcaaaactatctctatatataaagcttctaaacttcctctgctaaacataaaaactcacaagaaagacatttcaacttgctagacatggcc |
732 |
Q |
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| T |
28634867 |
gttgtgcactcaaaactatctctatatataaagcttctaaacttcctctgctaaacataaaaactcacaagaaagacatttcaacttgctagacatggcc |
28634966 |
T |
|
| Q |
733 |
a |
733 |
Q |
| |
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| |
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| T |
28634967 |
a |
28634967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 495 - 597
Target Start/End: Original strand, 28603818 - 28603916
Alignment:
| Q |
495 |
ccacacgcgtgaagtgaagaatgtcaaagaaagttgcttagtggaggagagtgttctgctcaaattaggcttttgttttactctttcttcccaaatggca |
594 |
Q |
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| T |
28603818 |
ccacaagcgtgaggtgaagaatgtcaaagaaagttgcgtagtagtggatattgtgccgcccaaattaggcttttgttttac----acttcccaaatggca |
28603913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 540
Target Start/End: Original strand, 28653644 - 28653682
Alignment:
| Q |
502 |
cgtgaagtgaagaatgtcaaagaaagttgcttagtggag |
540 |
Q |
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| T |
28653644 |
cgtgaggtgaagaatgtcaaagaaagttgcttagtggag |
28653682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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