View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_32 (Length: 372)
Name: NF3231_high_32
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 44729545 - 44729886
Alignment:
| Q |
17 |
gttgtcacaagtgattaaattaagctgtggctcattagagatatacagagaagaaagtgaagnnnnnnnnnncagaagtgccaatataacataactaaca |
116 |
Q |
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| T |
44729545 |
gttgtcacaagtgattaaattaagctgtggctcattagagatatacagagaagaaagtgaa-----aaaaaacagaagtgccaatataacataactaaca |
44729639 |
T |
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| Q |
117 |
attaaaaccaacttaaaccaacaactttcactaatttgaccatattattgatcaaatctttgcaccaataaaacttgtaaggaataaccaaccagatatc |
216 |
Q |
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| T |
44729640 |
attaaaaccaacttaaaccaacaactttcactaatttgaccatattattgatcaaatctttgcaccaataaaacttgtaaggaataaccaaccagatatc |
44729739 |
T |
|
| Q |
217 |
tttctcttaaccttcttttccttaatggtatccaagctaggcttccaccctttccctgataattgcctactcaaattcaaatactctgctctttcctcca |
316 |
Q |
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| T |
44729740 |
tttctcttaaccttcttttccttaattgtatccaagctaggcttccaccctttccctgataattgcctactcaaattcaaatactctgctctttcctcca |
44729839 |
T |
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| Q |
317 |
tcatttctggcaaaaactcacaaaaattaaacctctcttcttcattt |
363 |
Q |
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| T |
44729840 |
tcatttctggcaaaaactcacaaaaattaaacctctcttcttcattt |
44729886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 39084314 - 39084251
Alignment:
| Q |
229 |
ttcttttccttaatggtatccaagctaggcttccaccctttccctgataattgcctactcaaat |
292 |
Q |
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| T |
39084314 |
ttcttctccttaatagtatccaagctaggcttccaccctttccctgaaatctgcctattcaaat |
39084251 |
T |
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