View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_36 (Length: 362)
Name: NF3231_high_36
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 36514343 - 36514006
Alignment:
| Q |
11 |
cagagaatctatcatcaaggcactgcacgaggaggatatcaagtccgatgaaagtatacccgatttcgatgatgatcaacaagatttccaagaaataaaa |
110 |
Q |
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| T |
36514343 |
cagagaatctatcatcaaggcactgcacgaggaggatatcaggtccaatgaaagtatacccgattccgatgatgatgaacaagattttcaagaaataaaa |
36514244 |
T |
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| Q |
111 |
gatcctcgacaggtatatatgcat----atttcaatttctttctaataatctttttaaaaaatcgataatgcttgcgcaggacgctgctgctactgctga |
206 |
Q |
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| T |
36514243 |
gatcctcgacaggtatatatgcatgcatatttcaatttctttctaataatctgtttaaaa--tcgataatgctggcgcaggacgctgctgctactgctca |
36514146 |
T |
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| Q |
207 |
tgcagtaaacaaggttttggaagaacttattcagtcacctgcatcaaagaagatttgtgatgttcatcatcttgatcaacaaattctaacaaaagtgttg |
306 |
Q |
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| T |
36514145 |
tgcagtaaacaaggttttggaagaacttattcagtcaactgcatcaaagaagatttgtgacgttcatcatcttgatcgacaaattctaacaaaagtgttg |
36514046 |
T |
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| Q |
307 |
gggaatttgaaggattccattgctcaagaaactttgaatc |
346 |
Q |
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| T |
36514045 |
gggaatttgaaggattccattgctcaagaaaccttgaatc |
36514006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 4233725 - 4233825
Alignment:
| Q |
165 |
aaaatcgataatgcttgcgcaggacgctgctgctactgctgatgcagtaaacaaggttttggaagaacttattcagtcacctgcatcaaagaagatttgt |
264 |
Q |
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| T |
4233725 |
aaaatcgataatgcaggcgcaggacgctgctgctactgctgatgcagtaaacaaggttttggaagaatttattcagtcatctgcatcaaagaagatttgt |
4233824 |
T |
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| Q |
265 |
g |
265 |
Q |
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| T |
4233825 |
g |
4233825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 4233568 - 4233678
Alignment:
| Q |
34 |
tgcacgaggaggatatcaagtccgatgaaagtatacccgatttcgatgatgatcaacaagatttccaagaaataaaagatcctcgacaggtatatatgca |
133 |
Q |
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|||||||||||||||||| ||||| ||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4233568 |
tgcacgaggaggatatcaggtccggtgaaattatacccgataccgatgatgatgaacaagattttgaagaaataaaagatcctcgacaggtatatatgca |
4233667 |
T |
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| Q |
134 |
tatttcaattt |
144 |
Q |
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||||| ||||| |
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| T |
4233668 |
tatttgaattt |
4233678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 343
Target Start/End: Original strand, 6113532 - 6113660
Alignment:
| Q |
215 |
acaaggttttggaagaacttattcagtcacctgcatcaaagaagatttgtgatgttcatcatcttgatcaacaaattctaacaaaagtgttggggaattt |
314 |
Q |
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|||| ||||| |||||| | ||||||| |||||||||||||||||||||||||| |||||| ||||| | ||| ||| |||||||| |||| |||||| |
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| T |
6113532 |
acaatgtttttgaagaaatgattcagttacctgcatcaaagaagatttgtgatgcgcatcatgttgatggagaaactctgacaaaagtcttggagaattt |
6113631 |
T |
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| Q |
315 |
gaaggattccattgctcaagaaactttga |
343 |
Q |
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|||| |||||||| | |||||| |||||| |
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| T |
6113632 |
gaagaattccattacccaagaagctttga |
6113660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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