View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_high_37 (Length: 357)

Name: NF3231_high_37
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_high_37
NF3231_high_37
[»] chr3 (26 HSPs)
chr3 (10-331)||(50760619-50760940)
chr3 (10-331)||(44295555-44295874)
chr3 (208-282)||(44014717-44014791)
chr3 (208-282)||(50211812-50211886)
chr3 (215-280)||(35903093-35903158)
chr3 (302-338)||(24887298-24887334)
chr3 (302-333)||(14548736-14548767)
chr3 (302-341)||(40608396-40608435)
chr3 (302-341)||(50952349-50952388)
chr3 (208-294)||(2413598-2413684)
chr3 (297-339)||(36101586-36101628)
chr3 (215-281)||(41057233-41057299)
chr3 (303-332)||(5292536-5292565)
chr3 (214-338)||(21367686-21367812)
chr3 (210-247)||(36887638-36887675)
chr3 (303-340)||(43115073-43115110)
chr3 (305-338)||(44284098-44284131)
chr3 (303-336)||(45432955-45432988)
chr3 (210-254)||(21367972-21368016)
chr3 (303-331)||(21862191-21862219)
chr3 (305-341)||(25453877-25453913)
chr3 (208-256)||(25459549-25459597)
chr3 (303-335)||(37825144-37825176)
chr3 (214-282)||(41644370-41644438)
chr3 (208-256)||(45083196-45083244)
chr3 (208-256)||(51929844-51929892)
[»] chr1 (23 HSPs)
chr1 (208-327)||(33723301-33723422)
chr1 (214-330)||(10199333-10199451)
chr1 (220-332)||(31517671-31517785)
chr1 (299-342)||(10439701-10439744)
chr1 (303-341)||(4700082-4700120)
chr1 (208-256)||(32958740-32958788)
chr1 (214-282)||(51929387-51929455)
chr1 (209-256)||(6659783-6659830)
chr1 (303-338)||(15361059-15361094)
chr1 (302-337)||(26184768-26184803)
chr1 (302-341)||(30257699-30257738)
chr1 (303-338)||(35590908-35590943)
chr1 (303-341)||(4549246-4549284)
chr1 (303-341)||(39347983-39348021)
chr1 (220-257)||(2832074-2832111)
chr1 (233-282)||(5421888-5421937)
chr1 (214-324)||(29723522-29723634)
chr1 (303-332)||(44815319-44815348)
chr1 (302-338)||(5047165-5047201)
chr1 (302-338)||(7472330-7472366)
chr1 (263-332)||(37811877-37811948)
chr1 (218-282)||(43371821-43371884)
chr1 (303-335)||(48748331-48748363)
[»] chr5 (25 HSPs)
chr5 (208-338)||(17368695-17368823)
chr5 (220-341)||(17258814-17258937)
chr5 (208-329)||(11104946-11105056)
chr5 (299-338)||(40205086-40205125)
chr5 (208-331)||(499650-499775)
chr5 (306-338)||(36774726-36774758)
chr5 (303-334)||(16328888-16328919)
chr5 (302-337)||(26390805-26390840)
chr5 (302-333)||(37526214-37526245)
chr5 (302-333)||(37588375-37588406)
chr5 (208-254)||(26004916-26004962)
chr5 (305-335)||(31030148-31030178)
chr5 (215-281)||(32849256-32849322)
chr5 (304-338)||(34975383-34975417)
chr5 (302-332)||(37690651-37690681)
chr5 (299-332)||(8089306-8089339)
chr5 (208-282)||(17369284-17369354)
chr5 (303-332)||(19138733-19138762)
chr5 (208-338)||(28586685-28586817)
chr5 (304-332)||(6183469-6183497)
chr5 (306-338)||(35553207-35553239)
chr5 (305-337)||(36638767-36638799)
chr5 (302-338)||(37611230-37611266)
chr5 (302-338)||(37787960-37787996)
chr5 (215-259)||(41535030-41535074)
[»] chr8 (20 HSPs)
chr8 (204-282)||(2487923-2488001)
chr8 (208-338)||(42215219-42215357)
chr8 (208-282)||(16162837-16162911)
chr8 (208-330)||(9700028-9700152)
chr8 (205-282)||(34770945-34771022)
chr8 (302-334)||(11183568-11183600)
chr8 (302-338)||(20672769-20672805)
chr8 (242-342)||(26410294-26410397)
chr8 (208-278)||(1664450-1664520)
chr8 (263-332)||(10120781-10120853)
chr8 (302-332)||(11795117-11795147)
chr8 (204-246)||(38874818-38874860)
chr8 (304-338)||(39881769-39881803)
chr8 (303-337)||(41606919-41606953)
chr8 (240-282)||(42215041-42215083)
chr8 (203-256)||(18331817-18331870)
chr8 (303-332)||(30918138-30918167)
chr8 (303-336)||(44401582-44401615)
chr8 (302-338)||(2458581-2458617)
chr8 (302-338)||(43504770-43504806)
[»] chr6 (21 HSPs)
chr6 (247-338)||(31686321-31686414)
chr6 (302-337)||(32171487-32171522)
chr6 (208-338)||(7945804-7945935)
chr6 (305-337)||(1275169-1275201)
chr6 (302-338)||(3168276-3168312)
chr6 (302-338)||(4420662-4420698)
chr6 (215-282)||(4308646-4308713)
chr6 (214-253)||(12111073-12111112)
chr6 (303-338)||(34939763-34939798)
chr6 (299-341)||(1497997-1498039)
chr6 (214-256)||(3738204-3738246)
chr6 (210-256)||(5977032-5977078)
chr6 (303-333)||(27909654-27909684)
chr6 (242-337)||(32171336-32171433)
chr6 (303-337)||(32386579-32386613)
chr6 (303-332)||(7785760-7785789)
chr6 (297-341)||(2023587-2023631)
chr6 (214-250)||(31338086-31338122)
chr6 (302-338)||(32578001-32578037)
chr6 (220-260)||(32861641-32861681)
chr6 (305-341)||(33080596-33080632)
[»] chr4 (26 HSPs)
chr4 (243-338)||(50742790-50742887)
chr4 (302-338)||(19429728-19429764)
chr4 (303-338)||(5131266-5131301)
chr4 (220-338)||(21157787-21157907)
chr4 (302-338)||(14011253-14011289)
chr4 (305-341)||(19422414-19422450)
chr4 (209-277)||(51808810-51808878)
chr4 (205-256)||(10172165-10172216)
chr4 (302-337)||(35405967-35406002)
chr4 (202-281)||(37575849-37575928)
chr4 (303-337)||(7694026-7694060)
chr4 (303-337)||(18628559-18628593)
chr4 (214-256)||(32420983-32421025)
chr4 (303-337)||(43824303-43824337)
chr4 (303-337)||(45732693-45732727)
chr4 (303-332)||(2592325-2592354)
chr4 (305-338)||(6987759-6987792)
chr4 (302-339)||(29467639-29467676)
chr4 (302-338)||(1312860-1312896)
chr4 (210-282)||(18628474-18628546)
chr4 (302-338)||(20936244-20936280)
chr4 (208-256)||(21953376-21953424)
chr4 (208-296)||(28615398-28615485)
chr4 (208-280)||(32421179-32421251)
chr4 (303-335)||(45738099-45738131)
chr4 (302-338)||(51808888-51808924)
[»] chr2 (30 HSPs)
chr2 (303-341)||(41817184-41817222)
chr2 (208-324)||(787365-787483)
chr2 (220-323)||(43530042-43530147)
chr2 (208-253)||(37448696-37448741)
chr2 (214-282)||(28803455-28803523)
chr2 (299-335)||(38809348-38809384)
chr2 (214-282)||(39622028-39622096)
chr2 (207-282)||(13866955-13867030)
chr2 (201-256)||(15370235-15370290)
chr2 (302-341)||(25661123-25661162)
chr2 (214-329)||(8820217-8820334)
chr2 (208-282)||(11513973-11514047)
chr2 (299-333)||(15370359-15370393)
chr2 (302-332)||(24098127-24098157)
chr2 (210-256)||(35809970-35810016)
chr2 (214-333)||(40158742-40158863)
chr2 (208-258)||(43259936-43259986)
chr2 (268-330)||(1647263-1647327)
chr2 (204-245)||(6772448-6772489)
chr2 (304-337)||(24097828-24097861)
chr2 (304-341)||(30552661-30552698)
chr2 (268-338)||(33192221-33192293)
chr2 (302-338)||(1939347-1939383)
chr2 (305-337)||(2410063-2410095)
chr2 (302-330)||(5781696-5781724)
chr2 (216-276)||(9996821-9996881)
chr2 (208-256)||(10563479-10563527)
chr2 (267-332)||(28677637-28677704)
chr2 (302-338)||(34652051-34652087)
chr2 (212-252)||(36236366-36236406)
[»] chr7 (15 HSPs)
chr7 (205-282)||(23214932-23215009)
chr7 (214-281)||(3836608-3836675)
chr7 (303-338)||(24363617-24363652)
chr7 (204-247)||(34083523-34083566)
chr7 (220-282)||(8094383-8094445)
chr7 (303-341)||(27378844-27378882)
chr7 (302-335)||(12234904-12234937)
chr7 (220-341)||(752985-753108)
chr7 (208-252)||(1418526-1418570)
chr7 (208-256)||(3019886-3019934)
chr7 (305-341)||(3610758-3610794)
chr7 (215-255)||(7513663-7513703)
chr7 (302-338)||(28165110-28165146)
chr7 (302-334)||(35056843-35056875)
chr7 (302-338)||(40428574-40428610)
[»] scaffold0199 (1 HSPs)
scaffold0199 (208-278)||(6891-6961)
[»] scaffold0159 (1 HSPs)
scaffold0159 (302-330)||(27028-27056)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 50760940 - 50760619
Alignment:
Q  10 gcagagacattgataggatgcatcattcttgtcgaatggagattttgtagtaatatcaaactcggatccgtttgacatcgctttctgggacactaaggtc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760940 gcagagacattgataggatgcatcattcttgtcgaatggagattttgtagtaatatcaaactcggatccgtttgacatcgctttctgggacactaaggtc 50760841  T
Q  110 cagcctatctaaactacctgagttagccaccggcgcctgccaaattatacaagtttatataatattagcatgaaatgtgtgtctctcataccaaggcatg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760840 cagcctatctaaactacctgagttagccaccggcgcctgccaaattatacaagtttatataatattagcatgaaatgtgtgtctctcataccaaggcatg 50760741  T
Q  210 tttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttacaatctgttttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50760740 tttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttacaatctgttttc 50760641  T
Q  310 agcttatttccataagctctcc 331  Q
    ||||||||||||||||||||||    
T  50760640 agcttatttccataagctctcc 50760619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 44295874 - 44295555
Alignment:
Q  10 gcagagacattgataggatgcatcattcttgtcgaatggagattttgtagtaatatcaaactcggatccgtttgacatcgctttctgggacactaaggtc 109  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44295874 gcagagacattgattggatgcatcattcttgtcaaatggagattttgtagtaatatcaaactcgaatccgtttgacatcgctttctgggacactaaggtc 44295775  T
Q  110 cagcctatctaaactacctgagttagccaccggcgcctgccaaattatacaagtttatataatattagcatgaaatgtgtgtctctcataccaaggcatg 209  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||  |||||||||||||||||||| ||||||||||| |||||| |||    
T  44295774 cagcctatctaaactgcctgagttagccaccggcgcctgacaaatcatacaagtt--tataatattagcatgaaatgcgtgtctctcatgccaaggaatg 44295677  T
Q  210 tttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttacaatctgttttc 309  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||| ||   ||||||||||||||||||||| ||||||||||||| | |||||||||    
T  44295676 tttagattgacttgtttgagcttatctacaagcataagcacttgtgatactatttgagagaacttatgaaaactattcatgacatttatattctgttttc 44295577  T
Q  310 agcttatttccataagctctcc 331  Q
    ||||||||||||||||||||||    
T  44295576 agcttatttccataagctctcc 44295555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 44014717 - 44014791
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    ||||| ||||| |||||||||| | |||||| ||||||| ||||||||| || | |||||| |||||||||||||    
T  44014717 tgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaac 44014791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 50211886 - 50211812
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    ||||| |||| |||||||| |||| |||||| | ||||||||||||| | || | ||||||||||||||||||||    
T  50211886 tgtttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaac 50211812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 35903093 - 35903158
Alignment:
Q  215 attgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaa 280  Q
    ||||||||||||||| ||||| || | ||||||||||| |||||| | || |||||||||||||||    
T  35903093 attgacttatttgagttcatcaactaacataagcacttatgacactgtttcagagaacttatgaaa 35903158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 24887298 - 24887334
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||| ||||||||||||||||||||    
T  24887298 ctgttttcagcttattcccataagctctccaggatag 24887334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 14548736 - 14548767
Alignment:
Q  302 ctgttttcagcttatttccataagctctccag 333  Q
    ||||||||||||||||||||||||||||||||    
T  14548736 ctgttttcagcttatttccataagctctccag 14548767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 341
Target Start/End: Original strand, 40608396 - 40608435
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatagttt 341  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  40608396 ctgttttcagcttacttccataagttctccaggatagttt 40608435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 50952388 - 50952349
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatagttt 341  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  50952388 ctgttttaagcttatttccataagctctccaagatagttt 50952349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 2413598 - 2413684
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacat 294  Q
    ||||| |||| |||||||||| ||||||||  ||||||| ||||||| |  | | |||||||| ||||||||||| | |||||||||    
T  2413598 tgtttggatttacttatttgaactcatctattagcataatcacttgtaagtctgtttgagagagcttatgaaaacggctcatgacat 2413684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 36101628 - 36101586
Alignment:
Q  297 acaatctgttttcagcttatttccataagctctccaggatagt 339  Q
    |||| ||||||||||||||||| |||||||||| |||||||||    
T  36101628 acaagctgttttcagcttattttcataagctcttcaggatagt 36101586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 41057299 - 41057233
Alignment:
Q  215 attgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaa 281  Q
    |||| |||||||||||| ||||||| |||||||||||||||| || | ||| ||||| || ||||||    
T  41057299 attggcttatttgagcttatctacatgcataagcacttgtgagactgtttgggagaatttgtgaaaa 41057233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Original strand, 5292536 - 5292565
Alignment:
Q  303 tgttttcagcttatttccataagctctcca 332  Q
    ||||||||||||||||||||||||||||||    
T  5292536 tgttttcagcttatttccataagctctcca 5292565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 338
Target Start/End: Complemental strand, 21367812 - 21367686
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt---acaatctgttttca 310  Q
    ||||| |||||||||| | |||||| ||||||||   |||||  || | ||| |||||||||||||||| | | ||||||||    |||| |||||||||    
T  21367812 gattggcttatttgagattatctaccagcataagtt-ttgtgggactgtttgggagaacttatgaaaacagcttatgacattgttcacaagctgttttca 21367714  T
Q  311 gcttatttccataagctctccaggatag 338  Q
    |||||||| |||||| |||||| |||||    
T  21367713 gcttattttcataagttctccaagatag 21367686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 36887675 - 36887638
Alignment:
Q  210 tttagattgacttatttgagctcatctacaagcataag 247  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36887675 tttagattggcttatttgagcttatctacaagcataag 36887638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 43115110 - 43115073
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatagtt 340  Q
    |||||||||||||||||||||||||||| | |||||||    
T  43115110 tgttttcagcttatttccataagctctcaatgatagtt 43115073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 44284098 - 44284131
Alignment:
Q  305 ttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||| ||||||||||||||||||    
T  44284098 ttttcagcttatttctataagctctccaggatag 44284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 336
Target Start/End: Original strand, 45432955 - 45432988
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggat 336  Q
    ||||||||||||||||||||||||||| ||||||    
T  45432955 tgttttcagcttatttccataagctctacaggat 45432988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 21368016 - 21367972
Alignment:
Q  210 tttagattgacttatttgagctcatctacaagcataagcacttgt 254  Q
    |||||||||||||| ||||| |||| |||| ||||||||||||||    
T  21368016 tttagattgacttaattgagttcatatacaggcataagcacttgt 21367972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Original strand, 21862191 - 21862219
Alignment:
Q  303 tgttttcagcttatttccataagctctcc 331  Q
    |||||||||||||||||||||||||||||    
T  21862191 tgttttcagcttatttccataagctctcc 21862219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 25453877 - 25453913
Alignment:
Q  305 ttttcagcttatttccataagctctccaggatagttt 341  Q
    |||||||||||||| |||||||| |||||||||||||    
T  25453877 ttttcagcttattttcataagctttccaggatagttt 25453913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 25459549 - 25459597
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    ||||| |||||| ||||||||||| ||| || |||||||||||||||||    
T  25459549 tgtttggattgatttatttgagcttatcaactagcataagcacttgtga 25459597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 37825176 - 37825144
Alignment:
Q  303 tgttttcagcttatttccataagctctccagga 335  Q
    ||||||||| |||||||||||||||||||||||    
T  37825176 tgttttcaggttatttccataagctctccagga 37825144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 41644370 - 41644438
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||| |||| |||||||| |||||| |||||||||||||| ||||| | ||  |||||||||| |||||    
T  41644370 gattaacttctttgagcttatctactagcataagcacttgagacactgtttaggagaacttataaaaac 41644438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 45083244 - 45083196
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    ||||| ||||||| |||||||| | ||||||||||||||||| ||||||    
T  45083244 tgtttggattgacatatttgagtttatctacaagcataagcatttgtga 45083196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 51929892 - 51929844
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    ||||| |||||||||||||||||| |||||  ||||||| |||||||||    
T  51929892 tgtttggattgacttatttgagcttatctattagcataaacacttgtga 51929844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 327
Target Start/End: Original strand, 33723301 - 33723422
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttaca--atctgt 305  Q
    ||||| ||||||||||||||| || |||||| | ||||| ||||||||| || ||||| || |||||||| |||| | ||||||||| | ||  |  |||    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacatgttcatgagatgt 33723400  T
Q  306 tttcagcttatttccataagct 327  Q
    ||||||||||||||||||||||    
T  33723401 tttcagcttatttccataagct 33723422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 10199333 - 10199451
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgaca--tttacaatctgttttcag 311  Q
    |||||||||||||||||| |||||| | ||||||||||||||||||   ||| ||||||| |||||||  | | ||||||  || | ||  |||||||||    
T  10199333 gattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgttttcag 10199432  T
Q  312 cttatttccataagctctc 330  Q
    ||||||| |||||||||||    
T  10199433 cttattttcataagctctc 10199451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 332
Target Start/End: Original strand, 31517671 - 31517785
Alignment:
Q  220 cttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgaca--tttacaatctgttttcagcttatt 317  Q
    |||||||||||| || |||  |||||||||||||||| || | ||| |||||||||| |||||   ||||||||  || | || ||||||||||||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttatt 31517770  T
Q  318 tccataagctctcca 332  Q
    | |||||||||||||    
T  31517771 ttcataagctctcca 31517785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 10439744 - 10439701
Alignment:
Q  299 aatctgttttcagcttatttccataagctctccaggatagtttt 342  Q
    |||||| ||||||||||||||||||| |||||||||||||||||    
T  10439744 aatctgctttcagcttatttccataaactctccaggatagtttt 10439701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 4700082 - 4700120
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatagttt 341  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  4700082 tgttttcagcttattttcataagctctccaggatagttt 4700120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 32958788 - 32958740
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    |||||||||||||||||||||||| ||||||   |||||||||||||||    
T  32958788 tgtttagattgacttatttgagcttatctactgtcataagcacttgtga 32958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 51929387 - 51929455
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    ||||||||| |||||||| ||||||   ||||||||| |||||||| | || |||||||||||||||||    
T  51929387 gattgacttttttgagcttatctactgacataagcacctgtgacactgtttaagagaacttatgaaaac 51929455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 6659830 - 6659783
Alignment:
Q  209 gtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    |||| ||||||||||||| |||| |||||| |||||||||||||||||    
T  6659830 gtttggattgacttattttagcttatctactagcataagcacttgtga 6659783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 338
Target Start/End: Complemental strand, 15361094 - 15361059
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||| |||||||||||||||||||    
T  15361094 tgttttcagcttattttcataagctctccaggatag 15361059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 26184803 - 26184768
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggata 337  Q
    |||||||||| |||||||||||||||||||||||||    
T  26184803 ctgttttcagattatttccataagctctccaggata 26184768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 30257738 - 30257699
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatagttt 341  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  30257738 ctgttttcagcttatttctataagccctccaggatagttt 30257699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 338
Target Start/End: Original strand, 35590908 - 35590943
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||||||||||||||||| |||||    
T  35590908 tgttttcagcttatttccataagctctccatgatag 35590943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 4549284 - 4549246
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatagttt 341  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  4549284 tgttttcagcttatttccataagctatcctggatagttt 4549246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 39347983 - 39348021
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatagttt 341  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  39347983 tgttttcagcttatttccataagctttgcaggatagttt 39348021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 2832111 - 2832074
Alignment:
Q  220 cttatttgagctcatctacaagcataagcacttgtgac 257  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  2832111 cttatttgagcttatctactagcataagcacttgtgac 2832074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 5421888 - 5421937
Alignment:
Q  233 atctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||| ||||||||||||||||||| |||| ||| |||||||||| |||||    
T  5421888 atcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaac 5421937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 29723634 - 29723522
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgttttcag 311  Q
    |||||||| ||||||||| || ||| ||||||||||||||||| || | |||| |||||| ||| |||| | | ||||||| |  | || |||||||||     
T  29723634 gattgactaatttgagcttatttactagcataagcacttgtgatacagtttgaaagaactaatggaaacagcttatgacatgtccataaactgttttcaa 29723535  T
Q  312 cttatttccataa 324  Q
    ||||||| |||||    
T  29723534 cttatttacataa 29723522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Original strand, 44815319 - 44815348
Alignment:
Q  303 tgttttcagcttatttccataagctctcca 332  Q
    ||||||||||||||||||||||||||||||    
T  44815319 tgttttcagcttatttccataagctctcca 44815348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 5047201 - 5047165
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||||||||||||||| || |||||    
T  5047201 ctgttttcagcttatttccataagctcttcatgatag 5047165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 7472366 - 7472330
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  7472366 ctgttttcagcttattttcataagctctccaagatag 7472330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 37811948 - 37811877
Alignment:
Q  263 ttgagagaacttatgaaaactgttcatgacatttaca--atctgttttcagcttatttccataagctctcca 332  Q
    |||||||||||||||||||| | | ||||||| | ||  | ||||||||| ||||||||||| |||||||||    
T  37811948 ttgagagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctcca 37811877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 43371821 - 43371884
Alignment:
Q  218 gacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||| |||||||||| |||||  |||||||||||||||| || | |||||||| |||||||||||    
T  43371821 gactcatttgagctc-tctactggcataagcacttgtgagactgtttgagagagcttatgaaaac 43371884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Original strand, 48748331 - 48748363
Alignment:
Q  303 tgttttcagcttatttccataagctctccagga 335  Q
    ||||||||||||||||||||||||||| |||||    
T  48748331 tgttttcagcttatttccataagctcttcagga 48748363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 338
Target Start/End: Complemental strand, 17368823 - 17368695
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttaca-at-ctgt 305  Q
    ||||| ||||||||||||| | || ||||||  ||||||||||||||||||||    ||||||||||||||||||   | ||||||| | || || | ||    
T  17368823 tgtttggattgacttatttaaacttatctactggcataagcacttgtgacacc----gagagaacttatgaaaacaacttatgacatgttcatatgcagt 17368728  T
Q  306 tttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||| ||||||| |||||    
T  17368727 tttcagcttatttccataacctctccaagatag 17368695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 341
Target Start/End: Original strand, 17258814 - 17258937
Alignment:
Q  220 cttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttaca--atctgttttcagcttatt 317  Q
    |||||||||||| ||| || | |||||||||||||||||    ||| |||||| ||||||||  | | ||||||| | ||  | ||||||||||||||||    
T  17258814 cttatttgagcttatcaactaacataagcacttgtgacattctttgggagaacctatgaaaatagcttatgacatgttcataagctgttttcagcttatt 17258913  T
Q  318 tccataagctctccaggatagttt 341  Q
    | |||||||||| |||||||||||    
T  17258914 ttcataagctcttcaggatagttt 17258937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 11105056 - 11104946
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttacaatctgttt 307  Q
    ||||| |||||| ||||||||||| ||| || ||||||||||||||||| ||   ||| |||||||||||||||| ||| |||           ||||||    
T  11105056 tgtttggattgatttatttgagcttatcaaccagcataagcacttgtgatactatttgggagaacttatgaaaacagtttatg-----------ctgttt 11104968  T
Q  308 tcagcttatttccataagctct 329  Q
    ||||||||||||||||||||||    
T  11104967 tcagcttatttccataagctct 11104946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 40205086 - 40205125
Alignment:
Q  299 aatctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  40205086 aatctgttttcagcttatttctataagctctccaggatag 40205125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 331
Target Start/End: Original strand, 499650 - 499775
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgt 305  Q
    ||||| |||||||||||||||||| | ||||   ||||||||| ||| |  | | ||| |||||||||||||||| | | ||||||| |  ||||  |||    
T  499650 tgtttggattgacttatttgagcttacctactgacataagcacctgttaggctgtttgggagaacttatgaaaacagcttatgacatgttaacaagttgt 499749  T
Q  306 tttcagcttatttccataagctctcc 331  Q
    ||||||||||||||||||| ||||||    
T  499750 tttcagcttatttccataaactctcc 499775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 36774726 - 36774758
Alignment:
Q  306 tttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||||||||||||||||||||    
T  36774726 tttcagcttatttccataagctctccaggatag 36774758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 334
Target Start/End: Complemental strand, 16328919 - 16328888
Alignment:
Q  303 tgttttcagcttatttccataagctctccagg 334  Q
    ||||||||||||||||||||||||||||||||    
T  16328919 tgttttcagcttatttccataagctctccagg 16328888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 26390805 - 26390840
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggata 337  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26390805 ctgttttcaccttatttccataagctctccaggata 26390840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 37526214 - 37526245
Alignment:
Q  302 ctgttttcagcttatttccataagctctccag 333  Q
    ||||||||||||||||||||||||||||||||    
T  37526214 ctgttttcagcttatttccataagctctccag 37526245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 37588375 - 37588406
Alignment:
Q  302 ctgttttcagcttatttccataagctctccag 333  Q
    ||||||||||||||||||||||||||||||||    
T  37588375 ctgttttcagcttatttccataagctctccag 37588406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 26004916 - 26004962
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgt 254  Q
    ||||| ||||||||||||| |||| |||||| |||||||||||||||    
T  26004916 tgtttggattgacttattttagcttatctactagcataagcacttgt 26004962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 335
Target Start/End: Original strand, 31030148 - 31030178
Alignment:
Q  305 ttttcagcttatttccataagctctccagga 335  Q
    |||||||||||||||||||||||||||||||    
T  31030148 ttttcagcttatttccataagctctccagga 31030178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 32849322 - 32849256
Alignment:
Q  215 attgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaa 281  Q
    |||||||||||| |||| |||||| | |||||||||||||||  | | ||| |||||||||||||||    
T  32849322 attgacttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttatgaaaa 32849256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 34975417 - 34975383
Alignment:
Q  304 gttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||| |||||||||||||||    
T  34975417 gttttcagcttatttccattagctctccaggatag 34975383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 332
Target Start/End: Original strand, 37690651 - 37690681
Alignment:
Q  302 ctgttttcagcttatttccataagctctcca 332  Q
    |||||||||||||||||||||||||||||||    
T  37690651 ctgttttcagcttatttccataagctctcca 37690681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 8089339 - 8089306
Alignment:
Q  299 aatctgttttcagcttatttccataagctctcca 332  Q
    |||||||||||||||||||| |||||||||||||    
T  8089339 aatctgttttcagcttattttcataagctctcca 8089306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 17369354 - 17369284
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    ||||| ||||||||||||||| || ||||||   ||||| ||||||||||||    |||||||||||||||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataatcacttgtgacac----tgagagaacttatgaaaac 17369284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Original strand, 19138733 - 19138762
Alignment:
Q  303 tgttttcagcttatttccataagctctcca 332  Q
    ||||||||||||||||||||||||||||||    
T  19138733 tgttttcagcttatttccataagctctcca 19138762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 338
Target Start/End: Original strand, 28586685 - 28586817
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttac--aatctgt 305  Q
    ||||| |||||||| |||||| ||  ||||  |||||||||| |||||| || | ||| |||| |||||| |||  | | ||||||| | |  || ||||    
T  28586685 tgtttggattgactaatttgaactagtctaatagcataagcatttgtgaaactgtttgggagagcttatggaaatagcttatgacatatccgtaagctgt 28586784  T
Q  306 tttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||| |||||||||| |||||||    
T  28586785 tttcagcttatttcgataagctctctaggatag 28586817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Complemental strand, 6183497 - 6183469
Alignment:
Q  304 gttttcagcttatttccataagctctcca 332  Q
    |||||||||||||||||||||||||||||    
T  6183497 gttttcagcttatttccataagctctcca 6183469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 35553207 - 35553239
Alignment:
Q  306 tttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||||||||||||||| ||||    
T  35553207 tttcagcttatttccataagctctccagaatag 35553239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 36638799 - 36638767
Alignment:
Q  305 ttttcagcttatttccataagctctccaggata 337  Q
    |||||||||||||||||||||||||| ||||||    
T  36638799 ttttcagcttatttccataagctctctaggata 36638767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 37611230 - 37611266
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||| |||||||||||||||||||| |||||    
T  37611230 ctgttttcaggttatttccataagctctccaagatag 37611266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 37787960 - 37787996
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||| |||||||||||||||||||| |||||    
T  37787960 ctgttttcaggttatttccataagctctccaagatag 37787996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 41535030 - 41535074
Alignment:
Q  215 attgacttatttgagctcatctacaagcataagcacttgtgacac 259  Q
    |||| |||||||||||||||||||   ||||||||||||||||||    
T  41535030 attggcttatttgagctcatctactgccataagcacttgtgacac 41535074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 2487923 - 2488001
Alignment:
Q  204 ggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    ||||||||| ||||| |||||||||| ||||||||   ||||||||||||||| || | ||| ||||||||||||||||    
T  2487923 ggcatgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaac 2488001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 338
Target Start/End: Original strand, 42215219 - 42215357
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcactt------gtgacaccgcttgagagaacttatgaaaactgttcatgacatttaca-- 299  Q
    |||||||||| ||||||||||||| || |||  ||||||||||||      ||||||| | ||| ||||||| |||||||| | | ||||| | | ||      
T  42215219 tgtttagattaacttatttgagcttatttactggcataagcacttacgacagtgacactgtttgggagaactaatgaaaacagcttatgacttgttcata 42215318  T
Q  300 atctgttttcagcttatttccataagctctccaggatag 338  Q
    | ||||||||||||||||| |||||||||||||||||||    
T  42215319 agctgttttcagcttatttacataagctctccaggatag 42215357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 16162911 - 16162837
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    ||||| ||||| |||||||||| | |||||| ||||||| ||||||||| || | |||||| |||||||||||||    
T  16162911 tgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaaacttatgaaaac 16162837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 9700152 - 9700028
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgt 305  Q
    ||||| |||| ||||||||||||| |||||| ||||||| ||||||||| ||   |||||||| ||| ||||| |  || ||||||| |  | || ||||    
T  9700152 tgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctgt 9700053  T
Q  306 tttcagcttatttccataagctctc 330  Q
    ||||| ||||||| |||||||||||    
T  9700052 tttcaccttattttcataagctctc 9700028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 34771022 - 34770945
Alignment:
Q  205 gcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||||||| | |||||||||||||| | |||| | ||||||||||||||||| || | |||||||| | |||||||||    
T  34771022 gcatgtttggtttgacttatttgagtttatctgctagcataagcacttgtgaaactgtttgagagatcctatgaaaac 34770945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 11183600 - 11183568
Alignment:
Q  302 ctgttttcagcttatttccataagctctccagg 334  Q
    |||||||||||||||||||||||||||||||||    
T  11183600 ctgttttcagcttatttccataagctctccagg 11183568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 20672805 - 20672769
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||| |||||||||||||||||||    
T  20672805 ctgttttcagcttattttcataagctctccaggatag 20672769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 26410397 - 26410294
Alignment:
Q  242 cataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttaca--atctgttttcagctt-atttccataagctctccaggatag 338  Q
    ||||||||||| ||| || ||||| |||| |||||| |||| | ||||||||| | ||  | ||||||| ||||| ||||||||||||||||||||| ||    
T  26410397 cataagcacttctgagactgcttgggagagcttatggaaacagctcatgacatgtccagaagctgtttttagctttatttccataagctctccaggacag 26410298  T
Q  339 tttt 342  Q
    ||||    
T  26410297 tttt 26410294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 1664520 - 1664450
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatga 278  Q
    ||||||||| |||||||||||| | |||||| ||||||| ||||||||| || | ||| |||| |||||||    
T  1664520 tgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatga 1664450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 10120853 - 10120781
Alignment:
Q  263 ttgagagaacttatgaaaactgttcatgacatttacaat---ctgttttcagcttatttccataagctctcca 332  Q
    |||||||||||||||||||| | | ||||||||||  ||   ||||||||||||||||| |||||| ||||||    
T  10120853 ttgagagaacttatgaaaacagcttatgacatttatcatatgctgttttcagcttattttcataagttctcca 10120781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 332
Target Start/End: Complemental strand, 11795147 - 11795117
Alignment:
Q  302 ctgttttcagcttatttccataagctctcca 332  Q
    |||||||||||||||||||||||||||||||    
T  11795147 ctgttttcagcttatttccataagctctcca 11795117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 38874860 - 38874818
Alignment:
Q  204 ggcatgtttagattgacttatttgagctcatctacaagcataa 246  Q
    |||||||||||||||||||||||||||| || ||| |||||||    
T  38874860 ggcatgtttagattgacttatttgagcttatttactagcataa 38874818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 39881769 - 39881803
Alignment:
Q  304 gttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||||||||||||| |||||    
T  39881769 gttttcagcttatttccataagctctccatgatag 39881803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 41606919 - 41606953
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggata 337  Q
    |||||||||||||||||||||||||||| ||||||    
T  41606919 tgttttcagcttatttccataagctctctaggata 41606953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 42215041 - 42215083
Alignment:
Q  240 agcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||||||||||||||||||| | ||| ||||||||||||||||    
T  42215041 agcataagcacttgtgacactgtttgggagaacttatgaaaac 42215083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 18331870 - 18331817
Alignment:
Q  203 aggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    |||| ||||| ||||||||||||||| || |||||| | |||||||||||||||    
T  18331870 aggcttgtttggattgacttatttgatcttatctactaacataagcacttgtga 18331817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Complemental strand, 30918167 - 30918138
Alignment:
Q  303 tgttttcagcttatttccataagctctcca 332  Q
    ||||||||||||||||||||||||||||||    
T  30918167 tgttttcagcttatttccataagctctcca 30918138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 336
Target Start/End: Complemental strand, 44401615 - 44401582
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggat 336  Q
    ||||||||||||||||||||||| ||||||||||    
T  44401615 tgttttcagcttatttccataagttctccaggat 44401582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 2458581 - 2458617
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||| |||||||||||||||||| |||||||    
T  2458581 ctgttttcagtttatttccataagctctctaggatag 2458617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 43504806 - 43504770
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||||||||||| |||||| |||||    
T  43504806 ctgttttcagcttatttccataagttctccaagatag 43504770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 31686321 - 31686414
Alignment:
Q  247 gcacttgtgacaccgcttgagagaacttatgaaaactgttcatgaca--tttacaatctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||  | |||||||||||||| |||||   | ||||||  |||| |||||||||||||||||| ||| |||||||||||||||||    
T  31686321 gcacttgtgacattgtttgagagaacttatcaaaacaacttatgacaagtttataatctgttttcagcttatgtccgtaagctctccaggatag 31686414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 32171522 - 32171487
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggata 337  Q
    ||||||||||||||||||||||||||||||||||||    
T  32171522 ctgttttcagcttatttccataagctctccaggata 32171487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 338
Target Start/End: Original strand, 7945804 - 7945935
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacat--ttacaatctgt 305  Q
    |||||||||||||||||| ||||| ||||||   |||||||||| ||||||  | ||| ||||| ||||||||||   | ||| |||  |||  |  |||    
T  7945804 tgtttagattgacttatt-gagcttatctactgacataagcactcgtgacatggtttgggagaaattatgaaaacaacttatggcatgtttattagttgt 7945902  T
Q  306 tttcagcttatttccataagctctccaggatag 338  Q
    ||| |||||||||||||||||||||||||||||    
T  7945903 tttaagcttatttccataagctctccaggatag 7945935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 1275201 - 1275169
Alignment:
Q  305 ttttcagcttatttccataagctctccaggata 337  Q
    |||||||||||||||||||||||||||||||||    
T  1275201 ttttcagcttatttccataagctctccaggata 1275169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 3168276 - 3168312
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3168276 ctgttttcagcttatttccttaagctctccaggatag 3168312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 4420698 - 4420662
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||||||||||||||| |||||    
T  4420698 ctgttttcagcttatttccataagctctccaagatag 4420662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 4308713 - 4308646
Alignment:
Q  215 attgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    ||||||||||||||| | || |||  ||||||||||| ||||||| | ||| ||||||||||||||||    
T  4308713 attgacttatttgagttaatttactggcataagcactagtgacactgtttgggagaacttatgaaaac 4308646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 12111112 - 12111073
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttg 253  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  12111112 gattgacttatttgagcttatctactagcataagcacttg 12111073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 338
Target Start/End: Complemental strand, 34939798 - 34939763
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||||||||| |||||||||||||    
T  34939798 tgttttcagcttatttccataaactctccaggatag 34939763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 1498039 - 1497997
Alignment:
Q  299 aatctgttttcagcttatttccataagctctccaggatagttt 341  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||    
T  1498039 aatctgttttcaccttattttcataagctctccaagatagttt 1497997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 3738246 - 3738204
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    |||||||||||||||| | |||||| |||||||||||||||||    
T  3738246 gattgacttatttgagtttatctactagcataagcacttgtga 3738204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 5977078 - 5977032
Alignment:
Q  210 tttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||||    
T  5977078 tttagattgacttattcgagcttatctactagcataagcatttgtga 5977032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 333
Target Start/End: Original strand, 27909654 - 27909684
Alignment:
Q  303 tgttttcagcttatttccataagctctccag 333  Q
    |||||||||||||||||||||||||||||||    
T  27909654 tgttttcagcttatttccataagctctccag 27909684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 32171336 - 32171433
Alignment:
Q  242 cataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttaca--atctgttttcagcttatttccataagctctccaggata 337  Q
    |||||||||||| || || | |||||||| ||||||||||| | | ||||||  | ||  | || ||||||||||||||||||||||| |||||||||    
T  32171336 cataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagctatccaggata 32171433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 32386579 - 32386613
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggata 337  Q
    |||||||||||||||| ||||||||||||||||||    
T  32386579 tgttttcagcttattttcataagctctccaggata 32386613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Original strand, 7785760 - 7785789
Alignment:
Q  303 tgttttcagcttatttccataagctctcca 332  Q
    ||||||||||||||||||||||||||||||    
T  7785760 tgttttcagcttatttccataagctctcca 7785789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 2023631 - 2023587
Alignment:
Q  297 acaatctgttttcagcttatttccataagctctccaggatagttt 341  Q
    |||| |||||||||||||||||| |||||||||||| || |||||    
T  2023631 acaaactgttttcagcttatttctataagctctccaagaaagttt 2023587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 31338122 - 31338086
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcac 250  Q
    |||||||||||||||||| |||||| |||||||||||    
T  31338122 gattgacttatttgagcttatctactagcataagcac 31338086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 32578001 - 32578037
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  32578001 ctgttttcagcttatttccatatgctcttcaggatag 32578037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 32861681 - 32861641
Alignment:
Q  220 cttatttgagctcatctacaagcataagcacttgtgacacc 260  Q
    |||||||||||| |||||| || ||||||||||||||||||    
T  32861681 cttatttgagcttatctactagaataagcacttgtgacacc 32861641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 33080596 - 33080632
Alignment:
Q  305 ttttcagcttatttccataagctctccaggatagttt 341  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  33080596 ttttcagtttatttctataagctctccaggatagttt 33080632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 338
Target Start/End: Original strand, 50742790 - 50742887
Alignment:
Q  243 ataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgaca--tttacaatctgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||| | || | |||||||||||||||||||| ||||||||||  || | |  ||||||||| || |||| |||||||||||||||||||    
T  50742790 ataagcacttgttagactgtttgagagaacttatgaaaacagttcatgacatgttcataccctgttttcaactcattttcataagctctccaggatag 50742887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 19429764 - 19429728
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||||||||||||||||||||||||    
T  19429764 ctgttttcagcttatttccataagctctccaggatag 19429728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 338
Target Start/End: Original strand, 5131266 - 5131301
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||||||||||||||||||||    
T  5131266 tgttttcagcttatttccataagctctccaggatag 5131301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 338
Target Start/End: Complemental strand, 21157907 - 21157787
Alignment:
Q  220 cttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacatttacaat--ctgttttcagcttatt 317  Q
    |||||||||||||||||||   ||||||||||||| | || | |||  ||| ||||   |||| | | |||||||||||||   ||||||| ||||||||    
T  21157907 cttatttgagctcatctactgacataagcacttgtaagactgtttggaagagcttacagaaacagcttatgacatttacaaaagctgtttttagcttatt 21157808  T
Q  318 tccataagctctccaggatag 338  Q
    |||||||||||| ||||||||    
T  21157807 tccataagctcttcaggatag 21157787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 14011289 - 14011253
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||||||||||||||| |||||    
T  14011289 ctgttttcagcttatttccataagctctccaagatag 14011253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 19422450 - 19422414
Alignment:
Q  305 ttttcagcttatttccataagctctccaggatagttt 341  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19422450 ttttcaacttatttccataagctctccaggatagttt 19422414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 51808810 - 51808878
Alignment:
Q  209 gtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatg 277  Q
    |||||||||||||||||||| || |||||| || | ||||||||| || || ||||| |||||||||||    
T  51808810 gtttagattgacttatttgaacttatctactagtagaagcacttgcgagactgcttgggagaacttatg 51808878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 10172216 - 10172165
Alignment:
Q  205 gcatgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    |||||||| |||||| ||||||||||| ||||| | ||||||||||||||||    
T  10172216 gcatgtttggattgatttatttgagcttatctatatgcataagcacttgtga 10172165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 337
Target Start/End: Complemental strand, 35406002 - 35405967
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggata 337  Q
    |||||||||||||| |||||||||||||||||||||    
T  35406002 ctgttttcagcttacttccataagctctccaggata 35405967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 37575849 - 37575928
Alignment:
Q  202 aaggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaa 281  Q
    ||||| ||||| |||||||||||||||| | |||| | ||||||| | || ||||||  | |||||||||||||||||||    
T  37575849 aaggcttgtttggattgacttatttgagtttatctgctagcataaactctcgtgacattgtttgagagaacttatgaaaa 37575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 7694026 - 7694060
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggata 337  Q
    |||||||||||||||||||||| ||||||||||||    
T  7694026 tgttttcagcttatttccataaactctccaggata 7694060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 18628559 - 18628593
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggata 337  Q
    |||||||||||||||||||||||||||||| ||||    
T  18628559 tgttttcagcttatttccataagctctccaagata 18628593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 32420983 - 32421025
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    |||||||||||||||||| | |||| |||||||||||||||||    
T  32420983 gattgacttatttgagcttacctactagcataagcacttgtga 32421025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 43824337 - 43824303
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggata 337  Q
    ||||||||||||||||||||||||| |||||||||    
T  43824337 tgttttcagcttatttccataagctttccaggata 43824303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 45732727 - 45732693
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggata 337  Q
    |||||||||||||||||||||||||||| ||||||    
T  45732727 tgttttcagcttatttccataagctctcgaggata 45732693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Original strand, 2592325 - 2592354
Alignment:
Q  303 tgttttcagcttatttccataagctctcca 332  Q
    ||||||||||||||||||||||||||||||    
T  2592325 tgttttcagcttatttccataagctctcca 2592354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 6987759 - 6987792
Alignment:
Q  305 ttttcagcttatttccataagctctccaggatag 338  Q
    |||||| |||||||||||||||||||||||||||    
T  6987759 ttttcaacttatttccataagctctccaggatag 6987792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 29467639 - 29467676
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatagt 339  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  29467639 ctgttttcagcttatttccataaactctctaggatagt 29467676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 1312896 - 1312860
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  1312896 ctgttttcagcttatttccataaactctccaagatag 1312860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 18628474 - 18628546
Alignment:
Q  210 tttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    ||||||||||| |||||||||| ||||||   ||||| ||||||||| || | ||| |||| |||||||||||    
T  18628474 tttagattgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaac 18628546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 20936244 - 20936280
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  20936244 ctgttttcaccttatttccataatctctccaggatag 20936280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 21953424 - 21953376
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    ||||| |||||||||||||||||| |||||  ||||||| |||||||||    
T  21953424 tgtttggattgacttatttgagcttatctagtagcataatcacttgtga 21953376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 28615485 - 28615398
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt 296  Q
    ||||| ||||||||||||| || | |||||| ||||||| ||||||||| |  | ||| |||||||||||||||| | | |||||||||    
T  28615485 tgtttggattgacttatttaagtttatctactagcataaacacttgtgagattgtttg-gagaacttatgaaaacagctaatgacattt 28615398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 32421251 - 32421179
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaa 280  Q
    ||||| |||||||||||||||||  ||  || |||||||| |||||||| ||  |||||||||| ||||||||    
T  32421251 tgtttggattgacttatttgagcatattcactagcataaggacttgtgagactacttgagagaagttatgaaa 32421179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 45738131 - 45738099
Alignment:
Q  303 tgttttcagcttatttccataagctctccagga 335  Q
    |||||||||||||||||||||||||||| ||||    
T  45738131 tgttttcagcttatttccataagctctcaagga 45738099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 51808888 - 51808924
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  51808888 ctgttttcaacttatttctataagctctccaggatag 51808924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 303 - 341
Target Start/End: Complemental strand, 41817222 - 41817184
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatagttt 341  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41817222 tgttttcagcttatttccataagctctccaggatagttt 41817184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 324
Target Start/End: Complemental strand, 787483 - 787365
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgt 305  Q
    ||||| |||||  ||||| ||||  ||||||  ||||||||||||||||||| | ||| |||||||||||||||| | | ||||||| |  | || ||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgt 787384  T
Q  306 tttcagcttatttccataa 324  Q
    ||||||||||| |||||||    
T  787383 tttcagcttatctccataa 787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 43530042 - 43530147
Alignment:
Q  220 cttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgaca--tttacaatctgttttcagcttatt 317  Q
    |||||||||||| |||||| | |||| |||||||||| |  ||||| |||||||||||||||| | | ||||||  || |||| || |||||| ||||||    
T  43530042 cttatttgagctaatctactaacatatgcacttgtgagagtgcttgggagaacttatgaaaacagattatgacatgttcacaagctattttcaacttatt 43530141  T
Q  318 tccata 323  Q
    ||||||    
T  43530142 tccata 43530147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 37448696 - 37448741
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttg 253  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||    
T  37448696 tgtttagattgacttatttgagcttatctaccagcataagaacttg 37448741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 28803455 - 28803523
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||||||||||||||||| ||||||  |||||||||| ||||| || | |||||||||| |||| ||||    
T  28803455 gattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaac 28803523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 38809384 - 38809348
Alignment:
Q  299 aatctgttttcagcttatttccataagctctccagga 335  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38809384 aatctgttttcaacttatttccataagctctccagga 38809348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 39622096 - 39622028
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||| |||||||||| || ||||||  | ||||||||||| ||||| | ||||||||||||||||||||    
T  39622096 gatttacttatttgaacttatctacttgtataagcacttgcgacactgtttgagagaacttatgaaaac 39622028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 13867030 - 13866955
Alignment:
Q  207 atgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||||| ||||||| |||||||||| ||||||   ||||| ||||||||| || | ||||||||||||| ||||||    
T  13867030 atgtttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaac 13866955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 15370235 - 15370290
Alignment:
Q  201 caaggcatgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    |||||| ||||| |||||||||||||||||| ||||||  ||||||||| ||||||    
T  15370235 caaggcctgtttggattgacttatttgagcttatctactggcataagcatttgtga 15370290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 25661162 - 25661123
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatagttt 341  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  25661162 ctgttttcagattatttccataagctcttcaggatagttt 25661123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 329
Target Start/End: Original strand, 8820217 - 8820334
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgttttcag 311  Q
    ||||||||||||||||   |||||| |  ||||||||||  || || |||| ||||| |||||| |||| | |  |||||| |  |||| ||||||||||    
T  8820217 gattgacttatttgagtatatctactaatataagcactttcgagactgcttaagagaccttatggaaacagcttctgacatgttcacaagctgttttcag 8820316  T
Q  312 cttatttccataagctct 329  Q
    ||||||||||||||||||    
T  8820317 cttatttccataagctct 8820334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 11514047 - 11513973
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    ||||| |||||  ||||||||| | |||||| ||||||||||||||||| || | || ||||| |||||||||||    
T  11514047 tgtttggattggtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttatgaaaac 11513973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 15370359 - 15370393
Alignment:
Q  299 aatctgttttcagcttatttccataagctctccag 333  Q
    |||||||||||||||||||| ||||||||||||||    
T  15370359 aatctgttttcagcttatttgcataagctctccag 15370393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 332
Target Start/End: Complemental strand, 24098157 - 24098127
Alignment:
Q  302 ctgttttcagcttatttccataagctctcca 332  Q
    |||||||||||||||||||||||||||||||    
T  24098157 ctgttttcagcttatttccataagctctcca 24098127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 35810016 - 35809970
Alignment:
Q  210 tttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    |||||||||||||||||||||| ||||||  ||||||||| ||||||    
T  35810016 tttagattgacttatttgagcttatctaccggcataagcagttgtga 35809970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 333
Target Start/End: Complemental strand, 40158863 - 40158742
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacat--ttacaatctgttttcag 311  Q
    ||||| |||||||||||  ||||||   |||||| |||||||| || | ||| | |||||||||||||| | | |||||||  ||| ||  |||||||||    
T  40158863 gattggcttatttgagcatatctactgacataagaacttgtgagactgattgggggaacttatgaaaacagcttatgacatgtttataagttgttttcag 40158764  T
Q  312 cttatttccataagctctccag 333  Q
    |||| || ||||||||||||||    
T  40158763 cttaattacataagctctccag 40158742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 43259986 - 43259936
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgaca 258  Q
    ||||| ||||| ||||||||| || |||||| |||||||||||||||||||    
T  43259986 tgtttggattggcttatttgaacttatctactagcataagcacttgtgaca 43259936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 1647327 - 1647263
Alignment:
Q  268 agaacttatgaaaactgttcatgacat--ttacaatctgttttcagcttatttccataagctctc 330  Q
    ||||||||||||||| | | |||||||  | | || |||||||||||||||||||||||||||||    
T  1647327 agaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctctc 1647263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 6772448 - 6772489
Alignment:
Q  204 ggcatgtttagattgacttatttgagctcatctacaagcata 245  Q
    ||||||||| |||||||||||||||||| ||||||| |||||    
T  6772448 ggcatgtttggattgacttatttgagcttatctacaggcata 6772489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 24097861 - 24097828
Alignment:
Q  304 gttttcagcttatttccataagctctccaggata 337  Q
    ||||||||||||||| ||||||||||||||||||    
T  24097861 gttttcagcttattttcataagctctccaggata 24097828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 30552661 - 30552698
Alignment:
Q  304 gttttcagcttatttccataagctctccaggatagttt 341  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  30552661 gtttttagcttatttccataagctctctaggatagttt 30552698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 338
Target Start/End: Complemental strand, 33192293 - 33192221
Alignment:
Q  268 agaacttatgaaaactgttcatgacatttaca--atctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||| ||| ||||||| | ||  | ||||||||||||||| |  ||||||||||||||||||    
T  33192293 agaacttatgaaaacagtttatgacatatccataagctgttttcagcttatatttataagctctccaggatag 33192221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 1939347 - 1939383
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  1939347 ctgttttcaacttatttccataagctctccagtatag 1939383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 2410063 - 2410095
Alignment:
Q  305 ttttcagcttatttccataagctctccaggata 337  Q
    ||||||||||||||||||||||||| |||||||    
T  2410063 ttttcagcttatttccataagctctacaggata 2410095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 5781724 - 5781696
Alignment:
Q  302 ctgttttcagcttatttccataagctctc 330  Q
    |||||||||||||||||||||||||||||    
T  5781724 ctgttttcagcttatttccataagctctc 5781696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 9996881 - 9996821
Alignment:
Q  216 ttgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttat 276  Q
    |||||||||||||||| ||| || |||||||| |||||||| || ||||| |||| |||||    
T  9996881 ttgacttatttgagcttatcaactagcataagtacttgtgagactgcttgggagagcttat 9996821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 10563479 - 10563527
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    ||||| ||||||||||||||| || |||||| |||||||||| ||||||    
T  10563479 tgtttggattgacttatttgaacttatctaccagcataagcaattgtga 10563527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 28677637 - 28677704
Alignment:
Q  267 gagaacttatgaaaactgttcatgacatttaca--atctgttttcagcttatttccataagctctcca 332  Q
    |||||||||||||||| | | ||||||||| ||  |  ||||||| ||||||||||||||||||||||    
T  28677637 gagaacttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagctctcca 28677704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 34652051 - 34652087
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  34652051 ctgttttcaacttatttccataagctctccaagatag 34652087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 36236366 - 36236406
Alignment:
Q  212 tagattgacttatttgagctcatctacaagcataagcactt 252  Q
    |||||||||||||||||| |||||||  |||||||||||||    
T  36236366 tagattgacttatttgagttcatctatcagcataagcactt 36236406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 23215009 - 23214932
Alignment:
Q  205 gcatgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||||||| ||||||||||||||| || |||||| ||||||| ||||| ||| || | ||||||||| ||||||||||    
T  23215009 gcatgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaac 23214932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 3836608 - 3836675
Alignment:
Q  214 gattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaa 281  Q
    ||||| |||||||||||| ||||||  || ||||||||||||| || | ||| |||||||||||||||    
T  3836608 gattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttatgaaaa 3836675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 338
Target Start/End: Original strand, 24363617 - 24363652
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatag 338  Q
    |||||||||||||||||||||| |||||||||||||    
T  24363617 tgttttcagcttatttccataacctctccaggatag 24363652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 34083523 - 34083566
Alignment:
Q  204 ggcatgtttagattgacttatttgagctcatctacaagcataag 247  Q
    ||||||||| |||||||||||||||||||||||||  |||||||    
T  34083523 ggcatgtttggattgacttatttgagctcatctacttgcataag 34083566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 8094445 - 8094383
Alignment:
Q  220 cttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 282  Q
    |||||||||||| |||||| ||||||||||||||||| ||   ||||||||  ||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaac 8094383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 27378844 - 27378882
Alignment:
Q  303 tgttttcagcttatttccataagctctccaggatagttt 341  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  27378844 tgttttcagtttattttcataagctctccaggatagttt 27378882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 335
Target Start/End: Original strand, 12234904 - 12234937
Alignment:
Q  302 ctgttttcagcttatttccataagctctccagga 335  Q
    ||||||||||||||||||||||||||||| ||||    
T  12234904 ctgttttcagcttatttccataagctctctagga 12234937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 341
Target Start/End: Complemental strand, 753108 - 752985
Alignment:
Q  220 cttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaactgttcatgacattt--acaatctgttttcagcttatt 317  Q
    |||||||||||| ||||||  |||||||||| | | | || | |||| ||||||||||||||| ||| ||||||| |  | || ||||||| |||| |||    
T  753108 cttatttgagcttatctacttgcataagcacctctaagactgattgaaagaacttatgaaaacagtttatgacatatcaataagctgtttttagctaatt 753009  T
Q  318 tccataagctctccaggatagttt 341  Q
    | |||| |||| ||| ||||||||    
T  753008 ttcatatgctccccaagatagttt 752985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 1418570 - 1418526
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcactt 252  Q
    ||||| |||||||||||||||||| ||||||  ||||||||||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagcactt 1418526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 3019934 - 3019886
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtga 256  Q
    ||||| |||||||||||||||||| |||||| || ||||| ||||||||    
T  3019934 tgttttgattgacttatttgagcttatctactagtataagtacttgtga 3019886  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 3610758 - 3610794
Alignment:
Q  305 ttttcagcttatttccataagctctccaggatagttt 341  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  3610758 ttttcagcttatttctataagctctctaggatagttt 3610794  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 7513703 - 7513663
Alignment:
Q  215 attgacttatttgagctcatctacaagcataagcacttgtg 255  Q
    ||||||||||||||||| ||||||  |||||||||||||||    
T  7513703 attgacttatttgagcttatctactggcataagcacttgtg 7513663  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 28165146 - 28165110
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  28165146 ctgttttcaacttatttccataagctctccatgatag 28165110  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 35056843 - 35056875
Alignment:
Q  302 ctgttttcagcttatttccataagctctccagg 334  Q
    |||| ||||||||||||||||||||||||||||    
T  35056843 ctgtattcagcttatttccataagctctccagg 35056875  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 40428610 - 40428574
Alignment:
Q  302 ctgttttcagcttatttccataagctctccaggatag 338  Q
    ||||||||||||||||||||||||||||  |||||||    
T  40428610 ctgttttcagcttatttccataagctctttaggatag 40428574  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 6961 - 6891
Alignment:
Q  208 tgtttagattgacttatttgagctcatctacaagcataagcacttgtgacaccgcttgagagaacttatga 278  Q
    ||||||||| |||||||||||| | |||||| ||||||| ||||||||| || | ||| |||| |||||||    
T  6961 tgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttatga 6891  T

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Target: scaffold0159 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 27056 - 27028
Alignment:
Q  302 ctgttttcagcttatttccataagctctc 330  Q
    |||||||||||||||||||||||||||||    
T  27056 ctgttttcagcttatttccataagctctc 27028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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