View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_45 (Length: 349)
Name: NF3231_high_45
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 36135104 - 36135449
Alignment:
| Q |
1 |
tagagtgatgtgataaatgtgatatgttaataatataatggaaacaaagataaagagaaaataatgtgtgtgtatata--------------gtccaaat |
86 |
Q |
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| T |
36135104 |
tagagtgatgtgataaatgtgatatgttaataatataatggaaacaaagataaagagaaaataatgtgtgtgtatatatagaatttatgagtgtccaaat |
36135203 |
T |
|
| Q |
87 |
acaaaagttgtttaagtaattgataaaaatattgctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcattaagtgtttggttgaa |
186 |
Q |
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| T |
36135204 |
ataaaagttgtttaagtaattgataaaagtatttctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcattaagtgtttggttgaa |
36135303 |
T |
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| Q |
187 |
aaatttgtaattgacatatctttcaaccaattgagtggtttatgctcactttgnnnnnnnggaggaggtaatatattattatgggaagttgtgattttca |
286 |
Q |
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| T |
36135304 |
aaatttgtaattgacatatctttcaaccaattgagtggtttatgctcactttg-ttttttggaggaggtaatatattattatgggaagttgtgattttca |
36135402 |
T |
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| Q |
287 |
accatattttttattttgcaaaatctcttaaaaatatttggttattt |
333 |
Q |
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| T |
36135403 |
accatattttttattttgcaagatctcttaaaaataattggttattt |
36135449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 107 - 322
Target Start/End: Original strand, 41336660 - 41336870
Alignment:
| Q |
107 |
tgataaaaatattgctcaaccttcgcgtgtttcttcttcttgttcaatggcaagtgaagatcattaagtgtttggttgaaaaatttgtaattgacatatc |
206 |
Q |
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| T |
41336660 |
tgataaaaatatttttcaaccttcgcgtgttttttgtt---gttcaatgccaggtgaagatcattaagtgcttggttgaaaaatttgtaattgacatatc |
41336756 |
T |
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| Q |
207 |
tttcaaccaattgagtggtttatgctcactttgnnnnnnnggaggaggtaatatattattatgggaagttgtgattttcaaccata-ttttttattttgc |
305 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| | ||||||||| |||||| |||| ||||||||||||| |
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| T |
41336757 |
tttcaaccaattgagtggtttatgctcactttg-ttttttggacgaggtaatat-ttattatagtaagttgtga-tttcaagcatatttttttattttgc |
41336853 |
T |
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| Q |
306 |
aaaatctcttaaaaata |
322 |
Q |
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|| |||||| ||||||| |
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| T |
41336854 |
aagatctctaaaaaata |
41336870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 6463169 - 6463213
Alignment:
| Q |
6 |
tgatgtgataaatgtgatatgttaataatataatggaaacaaaga |
50 |
Q |
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| T |
6463169 |
tgatgtgataaatgtgatatgttaatgatgtaatgggaaaaaaga |
6463213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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