View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3231_high_47 (Length: 344)
Name: NF3231_high_47
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 32883436 - 32883120
Alignment:
| Q |
11 |
cacagagacacgcctaatctcagaggtgtccatgtttcagagagaaacttcttatcctttacaattaaacttttctcagttgaagtcttacaaaccagaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32883436 |
cacaaagacacgcctaatctcagaggtgtccatgtttcagagagaaacttcttaccctttacaattaaacttttctcagttgaagtcttacaaaccagaa |
32883337 |
T |
|
| Q |
111 |
agttttgacagttaaagtaaacacagaaaagtatataacaaaggatagcagaacacaattgaagatttcaacttggaattaaaaatgatgtagtacctct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32883336 |
agttttgacagttaaagtaaacacagaaaagtatataacaaaggatagcagaacacaattgaagatttcaacttggaattaaaaatgatgtagtacctct |
32883237 |
T |
|
| Q |
211 |
agatggcgtaacgtgtcaatgaggatagaatgcttctgcttaagcaacactaattgattctgtaacgctgcaaactcagttttcataatttgttcactgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32883236 |
agatggcgtaacgtgtcaatgaggatagaatgcttctgcttaagcaacactaattgattctgtaacgctgcaaactcagttttcataatttgttcactgt |
32883137 |
T |
|
| Q |
311 |
cctgaatagctgcttca |
327 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
32883136 |
cctgaatagctgcttca |
32883120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University