View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_49 (Length: 338)
Name: NF3231_high_49
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 45350328 - 45350647
Alignment:
| Q |
1 |
acttctgtatttggcaatgtaacaggaccagaacatagaggttcaccccaaccaaaatcagtagtgtcaaaagacaatttagtccaagttgtaatcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45350328 |
acttctgtatttggcaatgtaacaggaccagaacatagaggttcaccccaaccaaaatcagtagtgtcaaaagacaatttagtccaagttgtaatcaaaa |
45350427 |
T |
|
| Q |
101 |
gtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccatatcaattgccttgtgaaccaa |
200 |
Q |
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| T |
45350428 |
gtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccatatcaattgccttgtgaaccaa |
45350527 |
T |
|
| Q |
201 |
gccaactgaaaatgaaaaaggattctccaatagttcatttgctttacacaaagaatttgttagcacaatagcattaccaaaatatccctttggaattggg |
300 |
Q |
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| T |
45350528 |
gccaactgaaaatgaaaaaggattctccaatagttcatttgctttacacaaagaatttgttagcacaatagcattaccaaaatatccctttggaattggg |
45350627 |
T |
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| Q |
301 |
ggaatgaatcttggccttcc |
320 |
Q |
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|||||||||||||||||||| |
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| T |
45350628 |
ggaatgaatcttggccttcc |
45350647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 40495138 - 40495262
Alignment:
| Q |
69 |
aaaagacaatttagtccaagttgtaatcaaaagtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataacta |
168 |
Q |
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| T |
40495138 |
aaaagacaacctggtccatgttgtgatcaaaagtgttgatgttaaagttggcttacttcttttaacttcaaaatagtcaataacagatctcatataacta |
40495237 |
T |
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| Q |
169 |
tctgtaaccatatcaattgccttgt |
193 |
Q |
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| T |
40495238 |
tctgtcaccatctcaattgctttgt |
40495262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 9197983 - 9198078
Alignment:
| Q |
84 |
ccaagttgtaatcaaaagtgtgcctgttaaagaaggcctagctcttgtaacttcaaaataatcaatagcagatctcatataactatctgtaaccat |
179 |
Q |
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||||||||| ||||||||||| | | ||||| |||||||||||||| || ||||||||||||||||| |||||||| |||||||| || ||||| |
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| T |
9197983 |
ccaagttgtgatcaaaagtgtacaagccaaagatggcctagctcttgttacctcaaaataatcaatagctgatctcatgtaactatcagtgaccat |
9198078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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