View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_5 (Length: 617)
Name: NF3231_high_5
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 14665401 - 14665685
Alignment:
| Q |
17 |
caattaagcatggtcctactttaccactcacatagctccttagcatatatgtaaggacgaaaaggacgaataatatgtaccgctacttattattattaag |
116 |
Q |
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| T |
14665401 |
caattaagcatggtcctactttaccactcacatagctccttagcatatatgtaaggacgaaaaggacgaataatatgtaccgctacttattattattaag |
14665500 |
T |
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| Q |
117 |
cttattccattatacaattacaagaccctaaatttttacaagtcctttttcatgccgtggatggtgatgtaatgcatattacagtaacaagagtataaaa |
216 |
Q |
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| T |
14665501 |
cttattctattatacaattacaagaccctaaatttttacaagtcctttttcatgccgtggatg--gatgtaatgcatattacagtaacaagagtataaaa |
14665598 |
T |
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| Q |
217 |
taagtt-ggggggaaacgagagtaaaacatgatggcataattttgtgacta---tggtcttgcacaaagatagttttgtgttatgca |
299 |
Q |
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| T |
14665599 |
taagttgggggggaaacgagagtaaaacatgatggcataattttgtgactatggtggtcttgcacaaagatagttttgtgttatgca |
14665685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 309 - 607
Target Start/End: Original strand, 14665747 - 14666040
Alignment:
| Q |
309 |
ttttagccgagattcaaggcaacgccgaagagattgatctctctcagtaattaannnnnnnnncttcatgtctattgattgaatatctgatcacatgttt |
408 |
Q |
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| T |
14665747 |
ttttagccgagattcaaggcagcaccgaagagattgatctctctcggtaaatatttttt-----ttcatgtctattaattgaatatctgatcacatgttt |
14665841 |
T |
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| Q |
409 |
aaaagactcaattatttatcaatcgtaccataccatatgattgtaagcggcattaaaataactattcactattctattcacacattattttatcataata |
508 |
Q |
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| T |
14665842 |
aaaagactcaattatttatcaatcgtaccataccatatgactgtaagcggcattaaaataactattcactattctattcacacattattttatcataata |
14665941 |
T |
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| Q |
509 |
aagatttcacaaaattcatgtgtgcctataatgcacaagtattgcgtatgcaacattattcttttgaatattttaatgtaaacgtcacaagagcctatg |
607 |
Q |
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| T |
14665942 |
aagatttcacaaaattcatgtgtgcctataatgcacaagtattgcgtatgcaacattattcttttgaatattttaatgtaaacgtcacaagagcctatg |
14666040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 14664635 - 14664716
Alignment:
| Q |
127 |
tatacaattacaagaccctaaattttt-acaagtcc-tttttcatgccgtggatggtgatgtaatgcatattacagtaacaa |
206 |
Q |
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| T |
14664635 |
tatacaattataagaccctgatttttttagaagtccctttttcatgttgtggatggtgatgtaatgcatattatagtaacaa |
14664716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 14664796 - 14664840
Alignment:
| Q |
251 |
cataattttgtgactatggtcttgcacaaagatagttttgtgtta |
295 |
Q |
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| T |
14664796 |
cataattttggggctatgatattgcacaaagatagttttgtgtta |
14664840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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