View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_54 (Length: 319)
Name: NF3231_high_54
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 50941057 - 50940773
Alignment:
| Q |
19 |
tacaagagatctatgatgaaacgtcgtgtgaaacaaaggttaggcttgccatatttatagcctaagccttttgattttgtaaactgttagatag---tac |
115 |
Q |
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| T |
50941057 |
tacaaaagatctatgatgaaacgtcgtgtgaaacaaaggttaggcttgccatatttatagcctaagccttttgattttgtgcactgttagatagtactac |
50940958 |
T |
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| Q |
116 |
aatacattaaggatgggttttgtatagctatatttatagcctaagccatatttaaaaccattcaacttcttacaaagnnnnnnnnnnnnttaaatctagt |
215 |
Q |
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| T |
50940957 |
aatacattaaggatgggttttg------------tatagcctaagccatatttaaaaccattcaacttcttacaaagaaaaacaaaaaattaaatcta-- |
50940872 |
T |
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| Q |
216 |
aggttgttacggccgtagcttgaggttatggttgactgtaacaaccattggctttcttggtgttagtttttagtctttatagcattaaaagaggttttca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50940871 |
--gttgttacggccgtagcttgaggttatggttgactgtaacaaccattggctttcttggtgttagtttttagtctttatagcattaaaagaggttttca |
50940774 |
T |
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