View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_6 (Length: 609)
Name: NF3231_high_6
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 9 - 596
Target Start/End: Complemental strand, 3910774 - 3910186
Alignment:
| Q |
9 |
gaagaatatggccaagaaagacaagaattttatttggaaaaggtgtttgagaaaccaccaacacatggattctactgtcctaattgtaatgtttgtatcc |
108 |
Q |
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| T |
3910774 |
gaagaaaatggccaagaaagacaagaattttatttggaaaaggtgtttgagaaaccaccaacacatggattctattgtcctaactgtaatgtttgtatcc |
3910675 |
T |
|
| Q |
109 |
aaaaggtgtacattcaaaagatctacattcaacctgtgcaacaacctgatacaataagatgcacatcatgcttcagtttcctcattccaataggtacnnn |
208 |
Q |
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| T |
3910674 |
aaaaggtgtacattcaaaagatctacattcaacctgtgcaacaacctgatacaataagatgcacatcatgcttcagtttcctcattccaataggtacttt |
3910575 |
T |
|
| Q |
209 |
nnnnnagtttatagtaatgttttagaaactagactgaattggtcggttcaactggttgaactgagaactgattgtttcgccaattggtttgatcccaatt |
308 |
Q |
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| T |
3910574 |
tttttagtttatagtaatgttttagaaactagactgaattggtcggttcaactggttgaactgagaactgattgtttcgccaattggtttgatcccaatt |
3910475 |
T |
|
| Q |
309 |
acattggagtctggttgaaattttaatttttctttgtcttgaacaggtagctggttattccctggattggtatctaatggagatggagaatcaaatgatc |
408 |
Q |
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| T |
3910474 |
acattggagtctggttgaaatttaaatttttctttgtcttgaacaggtagctggttattccctggattggtatctaatggagatggagaatcaaatgatc |
3910375 |
T |
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| Q |
409 |
aaggtaatgtattttgatgaacatattttactagttgacttctcaagtaatcttaccaaacatattttgtttatcgaatcatggttatcggtatcctaag |
508 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
3910374 |
aaggtaatgtattttgatgaacatatttgactagttgacttctcaagtaatcttaccaaacatattttgtttatcaaatcatggttatcggtatcttaaa |
3910275 |
T |
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| Q |
509 |
atatatgcgagttgtatctcatcatgat-aaaaacttaatacaatgaataaaaatctcatcatgaatctcaatttattatgatgaatct |
596 |
Q |
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| T |
3910274 |
atatatgtgagttgtatctcatcacgataaaaaacttaacacaatgaataaaaatctcatgatgaatatcgatttattatgatgaatct |
3910186 |
T |
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