View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_66 (Length: 287)
Name: NF3231_high_66
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_66 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 42201680 - 42201437
Alignment:
| Q |
6 |
agcagcagagaagcaataatttgctgttgaacaagcagtagaaatggaataatttggtcccattaggccagtttctatagccagcaaagcaccacccatg |
105 |
Q |
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| T |
42201680 |
agcagcacaaaagcaataatttgctgttgaacaagcagtagaaatggaataatttggtcccattaggccagtttctatagccagcaaagcaccacccatg |
42201581 |
T |
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| Q |
106 |
ttggtgatggtatatggaatggccaatggagaaactttcttaactcccttttgaacatgattctgaatattagtggttaaattggttaaacctccaattg |
205 |
Q |
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| T |
42201580 |
ttggtgatggtatatggaatggccaatggagaaactttcttaactcccttttgaacatgattctgaatattagtggttaaattggttaaacctccaattg |
42201481 |
T |
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| Q |
206 |
ctgatcccaatagtattcgtattcttcctttgtccatctgttag |
249 |
Q |
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| T |
42201480 |
ctgatccctatagtattcctattcttcctttgtccatctgttag |
42201437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 42186152 - 42186080
Alignment:
| Q |
16 |
aagcaataatttgctgttgaacaagcagtagaaatggaataatttggtcccattaggccagtttctatagcca |
88 |
Q |
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| T |
42186152 |
aagcagtaatttgctgttgcacaagcagtagaaatggaataatttggtcccattaggccagtttctatagcca |
42186080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 88
Target Start/End: Complemental strand, 42195843 - 42195761
Alignment:
| Q |
6 |
agcagcagagaagcaataatttgctgttgaacaagcagtagaaatggaataatttggtcccattaggccagtttctatagcca |
88 |
Q |
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||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42195843 |
agcagcataaaagcagtaatttgctgttgcacaagcagtagaaatggaataatttggtcccattagaccagtttctatagcca |
42195761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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