View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_73 (Length: 265)
Name: NF3231_high_73
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_73 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 49431674 - 49431907
Alignment:
| Q |
1 |
ttcttcttttactaaattttggcataacataatgcctacatggtaatgataattggcactaaaataaatgttagagaagggtgagttggaattatgtag- |
99 |
Q |
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| T |
49431674 |
ttcttcttttactaaattttggcataacataatgcctacatggtagtgataattggcactaaaataaatgttagagaagggtgagttggaattatgtagg |
49431773 |
T |
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| Q |
100 |
-----gaagttctgtgaaaactttagcacactagggcaggggaggttgacaaactctcaatggtcttcaaatgttactatattttctgtttcaatagtga |
194 |
Q |
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| T |
49431774 |
agtaggaagttctgtgaaaactttagcacactagggcaggggaggttgacaaactctcaatggtcttcaaatgttactatattttctgtttcaatagtga |
49431873 |
T |
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| Q |
195 |
agtcagaattttataagttagcaggaaaactaat |
228 |
Q |
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| T |
49431874 |
agtcagaattttataagttagcaggaaaactaat |
49431907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 49422743 - 49422800
Alignment:
| Q |
22 |
gcataacataatgcctacatggtaatgataattggcactaaaataaatgttagagaag |
79 |
Q |
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| T |
49422743 |
gcataacataatgcctacatggtagtgataattggcactaaaataaatgttagagaag |
49422800 |
T |
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