View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_78 (Length: 254)
Name: NF3231_high_78
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_78 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 26131247 - 26131437
Alignment:
| Q |
48 |
tgcaatcaagaattgttccaacaaccatgcatttgtttcttcagtctcccgtattactatgccagtcgcaaaaacaatggtctgattatggtgattaacc |
147 |
Q |
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| T |
26131247 |
tgcaatcaagaattgttccaacaaccatgcatttgtttcttcagtctcccgtattactatcccagtcgcaaaaacaatggtctggttatggtgattaacc |
26131346 |
T |
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| Q |
148 |
ccaagaaacacaacaaacgggcaattgtacttgttttttcgatatgttgcatcaaaggtcaaaacatctccaaatatctcatagttcatac |
238 |
Q |
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| T |
26131347 |
ccaagaaacacaacaagcgggcaattgtacttgtttttccgatatgttgcatcaaaggtcaaaacatctccaaatatctcatagttcatac |
26131437 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 35241997 - 35242224
Alignment:
| Q |
11 |
catcagttataacggataaaggaggcttaccattcattgcaatcaagaattgttccaacaaccatgcatttgtttcttcagtctcccgtattactatgcc |
110 |
Q |
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| T |
35241997 |
catctgttataactgacaaaggaggtttaccgttcattgcactcaaaaattgttccaacaaccatacaaatgtgtcttcggtctcccgcgttactatacc |
35242096 |
T |
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| Q |
111 |
agtcgcaaaaacaatggtctgattatggtgattaaccccaagaaacacaacaaacgggcaattgtacttgttttttcgatatgttgcatcaaaggtcaaa |
210 |
Q |
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| T |
35242097 |
agtcgcaaaaacaatggtctgattatggtgattaacacctgagaacacaacaaacggacaattgtacttgttcttccgataagttgcatcgaaggccaaa |
35242196 |
T |
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| Q |
211 |
acatctccaaatatctcatagttcatac |
238 |
Q |
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| T |
35242197 |
acatctccaaatatctcataattcatac |
35242224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 11010359 - 11010132
Alignment:
| Q |
11 |
catcagttataacggataaaggaggcttaccattcattgcaatcaagaattgttccaacaaccatgcatttgtttcttcagtctcccgtattactatgcc |
110 |
Q |
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|||| |||||||| || |||||||| ||||| ||||||||| |||| ||||||||||||| | || ||| ||| ||||| |||||||| |||||| || |
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| T |
11010359 |
catctgttataactgacaaaggaggtttaccgttcattgcactcaaaaattgttccaacagctatacatatgtgtcttcggtctcccgcgttactacacc |
11010260 |
T |
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| Q |
111 |
agtcgcaaaaacaatggtctgattatggtgattaaccccaagaaacacaacaaacgggcaattgtacttgttttttcgatatgttgcatcaaaggtcaaa |
210 |
Q |
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| T |
11010259 |
tgtcgcaaaaacaatggtctgattatggtgattaacacctgagaacacaacaaacagacaattgtacttgttcttccgataagttgcatcaaaggccaaa |
11010160 |
T |
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| Q |
211 |
acatctccaaatatctcatagttcatac |
238 |
Q |
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| T |
11010159 |
acatctccaaatatctcataattcatac |
11010132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 21428093 - 21427900
Alignment:
| Q |
43 |
ttcattgcaatcaagaattgttccaacaaccatgcatttgtttcttcagtctcccgtattactatgccagtcgcaaaaacaatggtctgattatggtgat |
142 |
Q |
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||||||||| | ||||| |||||||||||||| | | || |||| ||||||||| |||| || |||| |||||||||| | ||||||||||| | |
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| T |
21428093 |
ttcattgcacttaagaactgttccaacaaccacacgtacgtctctttggtctcccgtgttacgataccagcaccaaaaacaatcatatgattatggtggt |
21427994 |
T |
|
| Q |
143 |
taaccccaagaaacacaacaaacgggcaattgtacttgttttttcgatatgttgcatcaaaggtcaaaacatctccaaatatctcatagttcat |
236 |
Q |
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| T |
21427993 |
taacacttgaaaaaataacaaacggacaattatacttgttttttcgatacgttacatcaaaggcaatgacatctccaaatatctcatagttcat |
21427900 |
T |
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