View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3231_high_81 (Length: 249)
Name: NF3231_high_81
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_81 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 50760284 - 50760514
Alignment:
| Q |
19 |
ccccctaaataggaaaaaccttggcctccttggttgagagatatgcagttgtaccagatgaaactgtaagtgtcttgttttagcatacagtacttctaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50760284 |
ccccctaaataggaaaaaccttggcctccttggttgagagatatgcagttgtaccagatgaaactgtaagtgtcttgttttagcatacagtacttctaaa |
50760383 |
T |
|
| Q |
119 |
cttaagactgaagagtgactagagtatgttaataggagcaattttgctcatagtttaagaaatctagaaagaaaaagataacatcaacttgtggggacta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50760384 |
cttaagactgaagagtgactagagtatgttaataggagcaattttgctcatagtttaagaaatctagaaagaaaaagataacatcaacttgtggggacta |
50760483 |
T |
|
| Q |
219 |
tctgcattatgagaactttaggagattgttt |
249 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
50760484 |
tctgcattatgagaactttaggagcttgttt |
50760514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 44295178 - 44295401
Alignment:
| Q |
20 |
cccctaaataggaaaaaccttggcctccttggttgagagatatgcagttgtaccagatgaaactgtaagtgtcttgttttagcatacagtacttctaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44295178 |
cccctaaataggaaaaaccttggcctccttagctgagagatatgcagttgtaccagatgaagctgtaagtgtctcgttttagcatacagtacttctaaac |
44295277 |
T |
|
| Q |
120 |
ttaagactgaagagtgactagagtatgttaataggagcaattttgctcatagtttaagaaatctagaaagaaaaagataa-catcaacttgtggggacta |
218 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44295278 |
ttaagactgaagggtgactaaagtatgttagtaggaacaattttgctcatagtttaagaaatctagaaagaaaaagataaccatcaacttgtggggacta |
44295377 |
T |
|
| Q |
219 |
tctgcattatgagaactttaggag |
242 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
44295378 |
tctgtattatgagaactttaggag |
44295401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University