View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_high_89 (Length: 240)
Name: NF3231_high_89
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_89 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28788366 - 28788585
Alignment:
| Q |
1 |
cttattactcaatcatcatcgtgtgtcatcctaagttgaagcaaactcctaagtatttcattattattaagtgattgtattttacgtgcagaaatcagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28788366 |
cttattactcaatcatcatcgtgtgtcatcctaagttgaagcaaactcctaagtatttcattattattaagtgattgt---ttacgtgcagaaatcagaa |
28788462 |
T |
|
| Q |
101 |
gtagtgggtcaatgtcatctcacgttttttagttgtatcaatcttgtcataataacttccttgaataataacatgattccataatgagattttataacat |
200 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28788463 |
gtagtgggtcaatgtcatctcgcattttttagttgtatcaatcttgtcataataacttccttgaataataacatgattccataatgagatttgataacat |
28788562 |
T |
|
| Q |
201 |
gttgattaagcacacaaattata |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
28788563 |
gttgattaagcacacaaattata |
28788585 |
T |
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