View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_high_90 (Length: 239)

Name: NF3231_high_90
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_high_90
NF3231_high_90
[»] chr7 (16 HSPs)
chr7 (18-222)||(4711513-4711717)
chr7 (18-224)||(4696617-4696835)
chr7 (18-222)||(4845441-4845657)
chr7 (18-157)||(4653946-4654085)
chr7 (18-156)||(4637307-4637445)
chr7 (18-157)||(4864372-4864514)
chr7 (18-145)||(4783353-4783480)
chr7 (18-145)||(4815782-4815909)
chr7 (18-221)||(4673153-4673368)
chr7 (18-224)||(4644157-4644363)
chr7 (176-224)||(4663310-4663358)
chr7 (89-151)||(4631451-4631513)
chr7 (168-224)||(4783262-4783318)
chr7 (168-224)||(4815691-4815747)
chr7 (174-224)||(4654114-4654164)
chr7 (168-209)||(4864537-4864578)
[»] chr4 (1 HSPs)
chr4 (18-128)||(18925280-18925387)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 4711717 - 4711513
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711717 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 4711618  T
Q  118 tggtttgatttgaatgcaatattctttggtgattttttccttctcataataagggctgaagtttttaagaagggtaagattgttgtttactttgacagag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711617 tggtttgatttgaatgcaatattctttggtgattttttccttctcataataagggctgaagtttttaagaagggtaagattgttgtttactttgacagag 4711518  T
Q  218 aaaag 222  Q
    |||||    
T  4711517 aaaag 4711513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 4696835 - 4696617
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||| | ||||||||||||||| ||| |||||||||    
T  4696835 aagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagttatgtttaacttctcatt 4696736  T
Q  118 tggtttgatttgaatgcaatattctttggtgattttttccttctcataat------------aagggctgaagtttttaagaagggtaagattgttgttt 205  Q
    ||||||| ||||||||||||||||||||||||||||||| |  |||| ||            ||||| |||||||||||||||||||||  |||||||||    
T  4696735 tggtttggtttgaatgcaatattctttggtgattttttcgtcatcatgatagaaccaaagagaagggttgaagtttttaagaagggtaacgttgttgttt 4696636  T
Q  206 actttgacagagaaaagtg 224  Q
    ||||| |||||||||||||    
T  4696635 actttaacagagaaaagtg 4696617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 4845657 - 4845441
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    |||||||||| ||||||| |||||||||||||| |||||||||| |||||||  | |  ||||||||||| |||| |||||||||| |||||||| ||||    
T  4845657 aagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaaagaaagttatgtttagcttcccatt 4845558  T
Q  118 tggtttgatttgaatgcaatattctttggtgattttttccttctcataat------------aagggctgaagtttttaagaagggtaagattgttgttt 205  Q
    ||||||||| |||||||||||||||||||| |||||||||  ||| | ||            ||||||||||||||||||||||||||||||||||||||    
T  4845557 tggtttgatctgaatgcaatattctttggtaattttttccacctcgtcatgaagccaaagtgaagggctgaagtttttaagaagggtaagattgttgttt 4845458  T
Q  206 actttgacagagaaaag 222  Q
    |||| ||||||||||||    
T  4845457 acttcgacagagaaaag 4845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 4653946 - 4654085
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||| |||    
T  4653946 aagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaaagttatgtttagcttcttatt 4654045  T
Q  118 tggtttgatttgaatgcaatattctttggtgattttttcc 157  Q
     |||| || ||| ||||||||||||||||||||| |||||    
T  4654046 cggttggacttggatgcaatattctttggtgattgtttcc 4654085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 4637307 - 4637445
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    |||||||||| ||||||| |||||| |||||||| ||||||||| |||||||||| || |||||| |||| ||||||||||||||| ||| ||| |||||    
T  4637307 aagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttatgctgttaggaatgaaagttatgtttaacttttcatt 4637406  T
Q  118 tggtttgatttgaatgcaatattctttggtgattttttc 156  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  4637407 tggtttgatttgtatgcaatattctttggtgattttttc 4637445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 4864372 - 4864514
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtt---tggaatgaaagttatgcttagcttctc 114  Q
    |||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||| |||||||| || ||    ||||||||||||||| ||||||||||    
T  4864372 aagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattattggccggaatgaaagttatgtttagcttctc 4864471  T
Q  115 atttggtttgatttgaatgcaatattctttggtgattttttcc 157  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  4864472 atttgatttgatttgaatgcaatattctttggtgattttttcc 4864514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 4783480 - 4783353
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||  |||| |  | || ||| ||||||| ||||||||||||||| |||||||||| ||    
T  4783480 aagaaggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtt 4783381  T
Q  118 tggtttgatttgaatgcaatattctttg 145  Q
    |||||||||||| ||| |||||||||||    
T  4783380 tggtttgatttggatggaatattctttg 4783353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 4815909 - 4815782
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||  |||| |  | || ||| ||||||| ||||||||||||||| |||||||||| ||    
T  4815909 aagaaggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttgtgttgttgggaatgaaagttatgtttagcttctcgtt 4815810  T
Q  118 tggtttgatttgaatgcaatattctttg 145  Q
    |||||||||||| ||| |||||||||||    
T  4815809 tggtttgatttggatggaatattctttg 4815782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 4673153 - 4673368
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    |||||||||| |||||||||||||||||||||||||||||||| | |  |||||| |  || ||| || ||||||||||| ||||| |||||||||||||    
T  4673153 aagaaggcattgacacaatttcgattccgttaatgaaagcatatttaacatttgatttgttcatgatgcttggaatgaaatttatgtttagcttctcatt 4673252  T
Q  118 tggtttgatttgaatgcaatattctttggtgattttttccttctcataat------------aagggctgaagtttttaagaagggtaagattgttgttt 205  Q
     || |||||||| || ||| |||||||||||||| ||||||  | || ||            ||||| ||||||||||||||||||||| |||||||||     
T  4673253 gggcttgatttggatacaaaattctttggtgattgtttcctcataatcatgaatccaaaggaaagggttgaagtttttaagaagggtaatattgttgtta 4673352  T
Q  206 actttgacagagaaaa 221  Q
    ||||||| ||||||||    
T  4673353 actttgatagagaaaa 4673368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 4644157 - 4644363
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||  |  ||||||           |||  ||||||||||||||| |||||||||||||    
T  4644157 aagaaggcatagacacaacttcgattccgttaatgaaagcataactaacatttga-----------tgtg-ggaatgaaagttatgtttagcttctcatt 4644244  T
Q  118 tggtttgatttgaatgcaatattctttggtgattttttccttctcataat------------aagggctgaagtttttaagaagggtaagattgttgttt 205  Q
    || ||| ||||| |||||||| |||||| |||| || | ||  |||| ||            ||||| ||||||||| ||||||||| ||||||||||||    
T  4644245 tgttttaatttggatgcaatactctttgatgatattattctcatcatgatgaagccaaagtgaagggttgaagttttgaagaagggtgagattgttgttt 4644344  T
Q  206 actttgacagagaaaagtg 224  Q
    |||||||||||||||||||    
T  4644345 actttgacagagaaaagtg 4644363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 4663310 - 4663358
Alignment:
Q  176 aagtttttaagaagggtaagattgttgtttactttgacagagaaaagtg 224  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  4663310 aagtttttaagaagggtaagattgtcgtttagtttgacagagaaaagtg 4663358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 4631451 - 4631513
Alignment:
Q  89 ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgatt 151  Q
    ||||||||||||||| ||||||||||||||||    ||||| |||||||||||||||||||||    
T  4631451 ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 4631513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 4783318 - 4783262
Alignment:
Q  168 aagggctgaagtttttaagaagggtaagattgttgtttactttgacagagaaaagtg 224  Q
    ||||| |||||||||||||||||||||  |||||||||||||  |||||||||||||    
T  4783318 aagggttgaagtttttaagaagggtaatgttgttgtttacttcaacagagaaaagtg 4783262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 4815747 - 4815691
Alignment:
Q  168 aagggctgaagtttttaagaagggtaagattgttgtttactttgacagagaaaagtg 224  Q
    ||||| |||||||||||||||||||||  |||||||||||||  |||||||||||||    
T  4815747 aagggttgaagtttttaagaagggtaatgttgttgtttacttcaacagagaaaagtg 4815691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 4654114 - 4654164
Alignment:
Q  174 tgaagtttttaagaagggtaagattgttgtttactttgacagagaaaagtg 224  Q
    |||||||||||||||| ||||| |||||||||||||  |||||||||||||    
T  4654114 tgaagtttttaagaagtgtaagtttgttgtttacttcaacagagaaaagtg 4654164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 4864537 - 4864578
Alignment:
Q  168 aagggctgaagtttttaagaagggtaagattgttgtttactt 209  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  4864537 aagggttgaagtttttaagaagggtaattttgttgtttactt 4864578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 18925387 - 18925280
Alignment:
Q  18 aagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatt 117  Q
    |||||||||| ||||| || || |||||||| ||||||||||||   |  ||||  ||||||||| |||||||||||||||||||  ||| ||||||| |    
T  18925387 aagaaggcatggacacgatctcaattccgttgatgaaagcataa---gcctttggttgatttatggtgtttggaatgaaagttatatttaacttctcagt 18925291  T
Q  118 tggtttgattt 128  Q
    |||||| ||||    
T  18925290 tggtttcattt 18925280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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