View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_high_93 (Length: 237)

Name: NF3231_high_93
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_high_93
NF3231_high_93
[»] chr4 (3 HSPs)
chr4 (142-237)||(42756933-42757032)
chr4 (18-61)||(42757113-42757156)
chr4 (144-213)||(39977911-39977979)
[»] scaffold1315 (2 HSPs)
scaffold1315 (142-226)||(1144-1228)
scaffold1315 (22-61)||(1024-1063)
[»] scaffold1293 (2 HSPs)
scaffold1293 (142-226)||(843-927)
scaffold1293 (22-61)||(1008-1047)
[»] chr2 (2 HSPs)
chr2 (143-233)||(6466792-6466881)
chr2 (18-60)||(6466666-6466708)
[»] chr1 (1 HSPs)
chr1 (144-206)||(22635700-22635762)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 42757032 - 42756933
Alignment:
Q  142 ctaaagaaagaaacaaagacaccc----ctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccat 237  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||    
T  42757032 ctaaagaaagaaacaaagacacccacctctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatcttatttttctatctcaccat 42756933  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 42757156 - 42757113
Alignment:
Q  18 attctattaattatattgtcaattataaaacacactctccttag 61  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  42757156 attctattaattatattgtcaatgataaaacacactcttcttag 42757113  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 39977911 - 39977979
Alignment:
Q  144 aaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctct 213  Q
    ||||||||||| ||| ||| |||||| |||||  ||||||||| ||| |||||||||||||||| |||||    
T  39977911 aaagaaagaaaaaaa-acatccctctttgaaactgccaccaacccaccttttttaccatgttgtgcctct 39977979  T

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Target: scaffold1315 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 1144 - 1228
Alignment:
Q  142 ctaaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttc 226  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  1144 ctaaagaaagaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatcttatttttc 1228  T

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Target: scaffold1315; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 1024 - 1063
Alignment:
Q  22 tattaattatattgtcaattataaaacacactctccttag 61  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  1024 tattaattatattgtcaatgataaaacacactctccttag 1063  T

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Target: scaffold1293 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 927 - 843
Alignment:
Q  142 ctaaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttc 226  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  927 ctaaagaaagaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatcttatttttc 843  T

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Target: scaffold1293; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 1047 - 1008
Alignment:
Q  22 tattaattatattgtcaattataaaacacactctccttag 61  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  1047 tattaattatattgtcaatgataaaacacactcttcttag 1008  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 6466792 - 6466881
Alignment:
Q  143 taaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctca 233  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||| |||||||||| |||||    
T  6466792 taaagaaaggaacaaagacacccctctatgtaatagtcaccaactcaca-tttttaccattttgttcctcttatcttatttttccatctca 6466881  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 6466666 - 6466708
Alignment:
Q  18 attctattaattatattgtcaattataaaacacactctcctta 60  Q
    |||||||||||||||||||||  |||||||||||| |||||||    
T  6466666 attctattaattatattgtcacatataaaacacaccctcctta 6466708  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 22635762 - 22635700
Alignment:
Q  144 aaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttg 206  Q
    |||||||| ||||||||||||| | ||| |||  ||||| |||||||||||||||||||||||    
T  22635762 aaagaaaggaacaaagacacccttgtataaaaccgccacaaactcacattttttaccatgttg 22635700  T

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