View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3231_high_94 (Length: 237)
Name: NF3231_high_94
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_high_94 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 8173098 - 8173320
Alignment:
| Q |
18 |
cagttatggttgattacacaccattgctgtagattgaagaacggatcagagatatttgaggctcatgatgccataacaaa-----caaatagaagtgtga |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8173098 |
cagttatggttgattacacaccattgttgtagattgaagaacggatcagagat---tgaggctcatgatgccataacaaattaaacaaatagaagtgtga |
8173194 |
T |
|
| Q |
113 |
gaatagattgagaaaaaatatttgaacaatgagcgacaatattttgatttctcatctaagtgatatgtggcatcatatatgtatttaaagtgatta-ttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
8173195 |
gaatagattgagaaaaaatatttgaacgatgagcgataatattttgatttctcatctaagtgatatgtggcatcatatatgtatttaaaggggttatttt |
8173294 |
T |
|
| Q |
212 |
atagattatgcttatttgaacaacgc |
237 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8173295 |
ttagattatgcttatttgaacaacgc |
8173320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 30534595 - 30534557
Alignment:
| Q |
199 |
aaagtgattatttatagattatgcttatttgaacaacgc |
237 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
30534595 |
aaagtgattatttttagattatgcttatttgaataacgc |
30534557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University