View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_1 (Length: 936)
Name: NF3231_low_1
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 193 - 798
Target Start/End: Complemental strand, 33882404 - 33881799
Alignment:
| Q |
193 |
atgtgtttccaatccaatcactgcaccttgagctatcatatcaagaccaaagaatcttttaatctcttcatccaatgattcaagctgttcttgatactgt |
292 |
Q |
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| T |
33882404 |
atgtgtttccaatccagtccttgcaatttgagctatcaaatcaagatcaaagaatcttttaatcttttcatccaatgcttcaagttcttcttgatactgt |
33882305 |
T |
|
| Q |
293 |
gcttttttgtaacaacaattccaccactggattttgtcttcattagaacatttaagaacaagttcttttccatctttcatttgtttgattattctcttcg |
392 |
Q |
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| T |
33882304 |
gcttttttgtaccaacaattccaccactggattttgtcttcattagaacattttagaacaagttcttttccatctttcatttgtttgattattctctttg |
33882205 |
T |
|
| Q |
393 |
tttcattaggtgatcggtccaacttcttgttgagttcatctatttgattgatcaatggtgctaatgattcgagagtttcttttaagcgttctagagttgg |
492 |
Q |
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| T |
33882204 |
tttcattaggtgatcggttcaacttcttgttgagttcatctatttgattgatcaatggtgctaatgattcgagagtttcttctaagcgttctagagttgg |
33882105 |
T |
|
| Q |
493 |
tttgaacttctcagctctgtctttcattttaataactgaattcaatagttcctcaattactataccaacaacagcatcaaccatagtgatgacctgctaa |
592 |
Q |
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| T |
33882104 |
tttgaacttcacagctctgtctttcatttcaataactgaattcaatagttcctcaattactataccaacaacagcatcaaccatagtgatgacctgctaa |
33882005 |
T |
|
| Q |
593 |
gaacaataaaaccaaagaaactcaaaattaaaagtcaaaaacttttgatctaaggaagttcaatgaaagtcaaacaacaag-tttttgttctcactgaga |
691 |
Q |
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| T |
33882004 |
gaacaataaaaccaaagaaactcaaaattaaaagtcaaaagc-tttgatctaaggaagttcaatgaaagtcaaacaacaagttttttgttctcactgaga |
33881906 |
T |
|
| Q |
692 |
tgtttgataattgagaataccttggcttttgtatttatttatgtacaatttttgtttgacgagttctttgatatttggatagctaatttacaatttagta |
791 |
Q |
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| T |
33881905 |
tgtttgataattgagaataccttggcttttgtatttatttatgtacaatttttgtttaccgagttctttgatatttggacagctaatttacaatttagta |
33881806 |
T |
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| Q |
792 |
ttgttgt |
798 |
Q |
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||||||| |
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| T |
33881805 |
ttgttgt |
33881799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 42 - 666
Target Start/End: Complemental strand, 33866739 - 33866111
Alignment:
| Q |
42 |
tcaacaatatctccttcaacttattgaaagtctcatccaacccaacaataaaaccaggtggttcaggaggccgacaaatattctct-aattcaatccttt |
140 |
Q |
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| T |
33866739 |
tcaacaatctcatcttcaactcattcaaaggaccatccaacccaacaataaaaccaggtggttgaggtggcaaacaaacac-ctcttaattcaactcttt |
33866641 |
T |
|
| Q |
141 |
cattcctcacaagaata--ctt-cgaatttcagcacgaaactctttaatctccaaatgtgtttccaatccaatcactgcaccttgagctatcatatcaag |
237 |
Q |
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| T |
33866640 |
cacttctcccaacattagccttactaaattcagcacgaaactctttaatctccaaaagtgtttccaatccagtcactgcaccttgagctatcatatcaag |
33866541 |
T |
|
| Q |
238 |
accaaagaatcttttaatctcttcatccaatgattcaagctgttcttgatactgtgcttttttgtaacaacaattccaccactggattttgtcttcatta |
337 |
Q |
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| T |
33866540 |
accaaagaatcttttaatctcttcatccaatgcttcaagttgttcttgatactgtgcttttttgtaacaacaattccaccactggattttgtcttcatta |
33866441 |
T |
|
| Q |
338 |
gaacatttaagaacaagttcttttccatctttcatttgtttgattattctcttcgtttcattaggtgatcggtccaacttcttgttgagttcatctattt |
437 |
Q |
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| T |
33866440 |
gaacattttagaacaagttcttttccatctttcatttgtttgatcagtgtttttgtttcattgggtgaatgatccaatttcttcttgagttcatctattt |
33866341 |
T |
|
| Q |
438 |
gattgatcaatggtgctaatgattcgagagtttcttttaagcgttctagagttggtttgaacttctcagctctgtctttcattttaataactgaattcaa |
537 |
Q |
| |
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|||||||||||||| ||||||||| || || ||| ||| | ||||||||||||||||||||| |||| ||| ||||| | || ||||||| ||| |
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| T |
33866340 |
gattgatcaatggtcctaatgattgaagtgtagcttctaatctatctagagttggtttgaacttcaaagctttgttcttcatgtcaacaactgaactcat |
33866241 |
T |
|
| Q |
538 |
tagttcctcaattactataccaacaacagcatc---aaccatagtgatgacctgctaagaacaataaaaccaaagaaactcaaaattaaaagtc-aaaaa |
633 |
Q |
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| T |
33866240 |
tagttcttcaactaatttcccaacaacagcatctagaaccatagccatgatctaccaagaacaaataaaacaaaaaa---caaaattaatagacaaaaaa |
33866144 |
T |
|
| Q |
634 |
cttttgatctaaggaagttcaatgaaagtcaaa |
666 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |
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| T |
33866143 |
attttgatctaaggaaggtcaatgaaagtcaaa |
33866111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 33882609 - 33882446
Alignment:
| Q |
15 |
cagagacactaagctcattcttcttactcaacaatatctccttcaacttattgaaagtctcatccaacccaacaataaaaccaggtggttcaggaggccg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
33882609 |
cagagacactaagctcattcttcttactcaacaatatctccttcaacttattgaaagtctcatccgacccaacaataaaaccaggtggtttaggaggccg |
33882510 |
T |
|
| Q |
115 |
acaaatattctctaat------tcaatcctttcattcctcacaagaatacttcgaatttcagca |
172 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
33882509 |
acaaatattctctaattcaaattcaatcctttcagtcctcacaagaacacttcgaatttcagca |
33882446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 698 - 771
Target Start/End: Complemental strand, 33865980 - 33865909
Alignment:
| Q |
698 |
ataattgagaataccttggcttttgtatttatttatgtacaatttttgtttgacgagttctttgatatttggat |
771 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||| | ||| ||| |||||||| |||||||||||||||| |
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| T |
33865980 |
ataattgagaatatcttggattttgtatttattta--aataatctttatttgacgaaatctttgatatttggat |
33865909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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