View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_100 (Length: 239)
Name: NF3231_low_100
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_100 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 56313562 - 56313772
Alignment:
| Q |
18 |
aattgatgatcacatagttaacaaaatggaaggaagcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatact |
117 |
Q |
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| T |
56313562 |
aattgatgatcacatagttaacaaaatggaaggaagcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatact |
56313661 |
T |
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| Q |
118 |
cctcctcctactaattaccgttcagaagaggaagaaggattgatgatgat---gcagcagcagcatcaacctaggcacctagtacaatatgctgctgcgg |
214 |
Q |
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| T |
56313662 |
cctcctcctactaattaccgttcagaagaagaagaaggattgatgattatgcagcagcagcagcatcaacctaggcacctagtacaatattcagctgcgg |
56313761 |
T |
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| Q |
215 |
gaaactctctg |
225 |
Q |
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| T |
56313762 |
gaaactctctg |
56313772 |
T |
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