View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_104 (Length: 227)

Name: NF3231_low_104
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_104
NF3231_low_104
[»] chr4 (3 HSPs)
chr4 (1-216)||(54300837-54301052)
chr4 (28-197)||(40975903-40976073)
chr4 (52-138)||(42852656-42852743)
[»] chr1 (3 HSPs)
chr1 (12-197)||(9316718-9316903)
chr1 (98-146)||(38671557-38671605)
chr1 (98-130)||(13432684-13432716)
[»] chr6 (5 HSPs)
chr6 (12-197)||(18766469-18766654)
chr6 (49-138)||(14121799-14121888)
chr6 (49-138)||(14115649-14115738)
chr6 (98-145)||(10080938-10080985)
chr6 (8-81)||(32327718-32327791)
[»] chr7 (4 HSPs)
chr7 (12-178)||(43365048-43365214)
chr7 (49-138)||(28443299-28443388)
chr7 (98-138)||(10830483-10830523)
chr7 (98-138)||(11024275-11024315)
[»] chr5 (2 HSPs)
chr5 (12-166)||(9334427-9334581)
chr5 (58-138)||(30579505-30579586)
[»] chr3 (5 HSPs)
chr3 (13-194)||(27901318-27901499)
chr3 (52-138)||(18867636-18867723)
chr3 (49-138)||(4675785-4675874)
chr3 (6-138)||(9576257-9576390)
chr3 (58-138)||(2786564-2786645)
[»] scaffold1487 (1 HSPs)
scaffold1487 (12-197)||(1344-1530)
[»] scaffold0045 (2 HSPs)
scaffold0045 (49-138)||(2016-2105)
scaffold0045 (49-138)||(8398-8487)
[»] chr2 (3 HSPs)
chr2 (67-136)||(24852356-24852426)
chr2 (49-138)||(33034609-33034699)
chr2 (98-138)||(3363106-3363146)
[»] scaffold0510 (1 HSPs)
scaffold0510 (14-138)||(1879-2003)
[»] chr8 (1 HSPs)
chr8 (98-138)||(5063341-5063381)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 54300837 - 54301052
Alignment:
Q  1 cctatttactcgccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54300837 cctatttactcgccatggcaagttgaaggcgagctaacttgccatgatgagaaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctga 54300936  T
Q  101 cgtggcagaaactcactgggaaagaaagctcaactcgcgaggcgagtagattacttgccatggcgagttcaatcagaataggcatggtataaaaggcgcg 200  Q
    |||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  54300937 cgtggcagaaacccattgggaaagaaagctcaactcgcgaggcgagcatattacttgccatggcgagttcaatcagaacaagcatggtataaaaggcgcg 54301036  T
Q  201 agctaacttcattcat 216  Q
    ||||||||||| ||||    
T  54301037 agctaacttcactcat 54301052  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 40975903 - 40976073
Alignment:
Q  28 ggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaactcactgggaaagaaa 127  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||  ||||||||||||||    
T  40975903 ggcgagctaacttgccatggcgagtaaaattactcgcgaggcgagttaaggcggcctaatcccttaaagctgacgtggcagaaatccactgggaaagaaa 40976002  T
Q  128 gctcaactcgcga-ggcgagtagattacttgccatggcgagttcaatcagaataggcatggtataaaaggc 197  Q
    ||||||||| | | |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||    
T  40976003 gctcaactcaccatggcgagcaaattacttgccatggcgagttcaatcagaacaggcatagtataaaaggc 40976073  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 42852656 - 42852743
Alignment:
Q  52 caaaattactcgcgaggcgagttaaggcggcctaatcct-tcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    ||||| |||||| |||||||| ||||||||||||| | | |||||||||||||||||||||| ||   ||||||||||||||||||||    
T  42852656 caaaactactcgtgaggcgagctaaggcggcctaaccttctcaaagctgacgtggcagaaacccatatggaaagaaagctcaactcgc 42852743  T

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Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 9316903 - 9316718
Alignment:
Q  12 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 111  Q
    |||||||  |||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9316903 gccatggtgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 9316804  T
Q  112 ctcactgggaaagaaagctcaactcgcgaggcgagtagattacttgccatggcgagttcaatcagaataggcatggtataaaaggc 197  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| || ||||||||    
T  9316803 cccactgggaaagaaagctcaactcgcgaggcgagcagattacttgccatggcgagttcaatcagaacagacatagtttaaaaggc 9316718  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 38671557 - 38671605
Alignment:
Q  98 tgacgtggcagaaactcactgggaaagaaagctcaactcgcgaggcgag 146  Q
    ||||||||||||||| |||||| ||||||||||||| |||| |||||||    
T  38671557 tgacgtggcagaaacccactggcaaagaaagctcaagtcgccaggcgag 38671605  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 13432716 - 13432684
Alignment:
Q  98 tgacgtggcagaaactcactgggaaagaaagct 130  Q
    |||||||||||||||||||||| ||||||||||    
T  13432716 tgacgtggcagaaactcactggcaaagaaagct 13432684  T

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Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 18766654 - 18766469
Alignment:
Q  12 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 111  Q
    |||||||| |||| ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18766654 gccatggcgagttcaaggcgagctaacgtgccatggcgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 18766555  T
Q  112 ctcactgggaaagaaagctcaactcgcgaggcgagtagattacttgccatggcgagttcaatcagaataggcatggtataaaaggc 197  Q
    | |||| | |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  18766554 cccactagaaaagaaagctcaactcacgaggcgagcagattacttgccatggctagttcaatcagaacaggcatagtataaaaggc 18766469  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 14121799 - 14121888
Alignment:
Q  49 gagcaaaattactcgcgaggcgagttaaggcggcctaatc-cttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    |||||||| ||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||| ||  ||| |||||||||| ||||||    
T  14121799 gagcaaaactactcgcgaggcgagctaaggcggcctaacctcttc-aagctgacgtggcagaaacccataggggaagaaagctcgactcgc 14121888  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 14115649 - 14115738
Alignment:
Q  49 gagcaaaattactcgcgaggcgagttaaggcggcctaatc-cttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    |||||||| ||||||||||||||| ||||||||||||| | |||| |||||||||||||||||||  |  ||| | |||||||||||||||    
T  14115649 gagcaaaactactcgcgaggcgagctaaggcggcctaacctcttc-aagctgacgtggcagaaacctataggggatgaaagctcaactcgc 14115738  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 10080938 - 10080985
Alignment:
Q  98 tgacgtggcagaaactcactgggaaagaaagctcaactcgcgaggcga 145  Q
    ||||||||||||||| |||||| ||||||||||||| |||| ||||||    
T  10080938 tgacgtggcagaaacccactggcaaagaaagctcaagtcgccaggcga 10080985  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 32327718 - 32327791
Alignment:
Q  8 actcgccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcgg 81  Q
    |||||| ||||| ||| ||||||||||| ||| ||||||  ||| | ||| ||||||||||||||| |||||||    
T  32327718 actcgcaatggcgagtggaaggcgagcttactcgccatggcgagtagaatgactcgcgaggcgagtgaaggcgg 32327791  T

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Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 43365214 - 43365048
Alignment:
Q  12 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 111  Q
    |||||||| |||| || || |||||||||||||||  |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||    
T  43365214 gccatggcgagttcaaagcaagctaacttgccatggcgagcaaaattactcgccaggcgagttaagacggcctaatccttcaaaactgacgtggcagaaa 43365115  T
Q  112 ctcactgggaaagaaagctcaactcgcgaggcgagtagattacttgccatggcgagttcaatcagaa 178  Q
      ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43365114 tccactgggaaagaaagctcaactcgcgaggcgagcagattacttgccatggcgagttcaatcagaa 43365048  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 28443388 - 28443299
Alignment:
Q  49 gagcaaaattactcgcgaggcgagttaaggcggcctaatc-cttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    |||||||| ||||||||||||||| ||||||||||||| | |||| |||||||||||||||||||  |  ||| | |||||||||||||||    
T  28443388 gagcaaaactactcgcgaggcgagctaaggcggcctaacctcttc-aagctgacgtggcagaaacctataggggatgaaagctcaactcgc 28443299  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 10830483 - 10830523
Alignment:
Q  98 tgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    ||||||||||||||| |||||| ||||||||||||| ||||    
T  10830483 tgacgtggcagaaacccactggcaaagaaagctcaagtcgc 10830523  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 11024275 - 11024315
Alignment:
Q  98 tgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    ||||||||||||||| |||||| ||||||||||||| ||||    
T  11024275 tgacgtggcagaaacccactggcaaagaaagctcaagtcgc 11024315  T

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Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 9334427 - 9334581
Alignment:
Q  12 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 111  Q
    |||||||| |||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9334427 gccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaaactgacgtggcagaaa 9334526  T
Q  112 ctcactgggaaagaaagctcaactcgcgaggcgagtagattacttgccatggcga 166  Q
    | ||||||||||||||||||||||||||||||||| | ||||| |||||||||||    
T  9334527 cccactgggaaagaaagctcaactcgcgaggcgagcaaattacctgccatggcga 9334581  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 30579505 - 30579586
Alignment:
Q  58 tactcgcgaggcgagttaaggcggcctaatc-cttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    |||||||||||||||||||||||||| || | | ||| |||||||||||||||||| ||||||  ||||||  |||||||||    
T  30579505 tactcgcgaggcgagttaaggcggccaaaactcctcagagctgacgtggcagaaacccactggtgaagaaacatcaactcgc 30579586  T

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Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 27901499 - 27901318
Alignment:
Q  13 ccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaac 112  Q
    ||||||| |||| || ||| || ||||| |||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27901499 ccatggcgagttcaaagcgggcaaacttaccatggcgagcaaaattacgcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaac 27901400  T
Q  113 tcactgggaaagaaagctcaactcgcgaggcgagtagattacttgccatggcgagttcaatcagaataggcatggtataaaa 194  Q
     |||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| | |||| ||||||||    
T  27901399 ccactaggaaagaaagctcaactcgtgaggcgagcagattacttgccatggcgagttcaatcagaacatgcatagtataaaa 27901318  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 18867723 - 18867636
Alignment:
Q  52 caaaattactcgcgaggcgagttaaggcggcctaatc-cttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    ||||| ||||||||||||||| ||||||||||||| | | |||||| ||||||||||||||| ||  ||| |||||||| ||||||||    
T  18867723 caaaactactcgcgaggcgagctaaggcggcctaacctcctcaaagttgacgtggcagaaacccataggggaagaaagcacaactcgc 18867636  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 4675874 - 4675785
Alignment:
Q  49 gagcaaaattactcgcgaggcgagttaaggcggcctaatc-cttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    |||||||| |||||| |||||||| ||||||||||||| | |||| |||||||||||||||||||  |  ||| |||||||||||||||||    
T  4675874 gagcaaaactactcgtgaggcgagctaaggcggcctaacctcttc-aagctgacgtggcagaaacctataggggaagaaagctcaactcgc 4675785  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 9576257 - 9576390
Alignment:
Q  6 ttactcgccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaa-gctgacgtg 104  Q
    |||||||||||||| ||| ||||||||||| ||| ||||||  |||   ||| ||||||||||||||| |||||||  ||  |  ||||| |||||||||    
T  9576257 ttactcgccatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggcggtttagcctctcaaatgctgacgtg 9576356  T
Q  105 gcagaaactcactgggaaagaaagctcaactcgc 138  Q
    ||| |||| || |||| ||||||  |||||||||    
T  9576357 gcacaaacccaatggggaagaaacttcaactcgc 9576390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 2786645 - 2786564
Alignment:
Q  58 tactcgcgaggcgagttaaggcggcctaatc-cttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    |||| ||||||||||||| ||||||  || | | |||||||||||||||||||||| ||||||  ||||||  |||||||||    
T  2786645 tacttgcgaggcgagttagggcggctaaaactcctcaaagctgacgtggcagaaacccactggtgaagaaacatcaactcgc 2786564  T

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Target: scaffold1487 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 1344 - 1530
Alignment:
Q  12 gccatggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 111  Q
    |||||||| |||| | |||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  1344 gccatggcgagttcatggcgagctaactagccatggcgagcaaaattactcgcgaggcgagttaaggcggcctaatccctcaaatctgacgtggcagaaa 1443  T
Q  112 ctcactgggaaagaaagctcaactcgcga-ggcgagtagattacttgccatggcgagttcaatcagaataggcatggtataaaaggc 197  Q
    | |||||| |||||||||||||||||| | |||||| | ||||| ||||||||||||||||||||||| | |||| |||||||||||    
T  1444 cccactggtaaagaaagctcaactcgccatggcgagcaaattacctgccatggcgagttcaatcagaacatgcatagtataaaaggc 1530  T

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Target: scaffold0045 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 2016 - 2105
Alignment:
Q  49 gagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    |||||| ||||||||||||||||  ||||||||||||  |||||||||||||||||||| |||| ||  ||| ||||||||| |||||||    
T  2016 gagcaacattactcgcgaggcgaactaaggcggcctagcccttcaaagctgacgtggcaaaaacccataggggaagaaagcttaactcgc 2105  T

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Target: scaffold0045; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 8398 - 8487
Alignment:
Q  49 gagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    |||||| ||||||||||||||||  || |||||||||  |||||||| ||||||||||| |||| ||  ||| ||||||||| |||||||    
T  8398 gagcaatattactcgcgaggcgaactatggcggcctagcccttcaaatctgacgtggcaaaaacccataggggaagaaagcttaactcgc 8487  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 24852356 - 24852426
Alignment:
Q  67 ggcgagttaaggcggcctaatc-cttcaaagctgacgtggcagaaactcactgggaaagaaagctcaactc 136  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||| |||| || ||||||| |||||||    
T  24852356 ggcgagttaaggcggcctaatctcctcaaagctgacgtggtagaaacccacttgggaagaaagatcaactc 24852426  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 33034699 - 33034609
Alignment:
Q  49 gagcaaaattactcgcgaggcgagttaaggcggcctaatcct-tcaaagctgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    |||| ||| ||||||||||||||| ||||||||||||| ||| |  ||||||| |||||||||||  |  ||| |||||||||||||||||    
T  33034699 gagccaaactactcgcgaggcgagctaaggcggcctaagcctcttgaagctgatgtggcagaaacctataggggaagaaagctcaactcgc 33034609  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 3363146 - 3363106
Alignment:
Q  98 tgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    ||||||||||||||| || ||||||||||||||||| ||||    
T  3363146 tgacgtggcagaaacccaatgggaaagaaagctcaagtcgc 3363106  T

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Target: scaffold0510 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 2003 - 1879
Alignment:
Q  14 catggcaagttgaaggcgagctaacttgccatgatgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaact 113  Q
    |||||| ||| ||||||||||| ||| ||||||  ||   || |||||||||||||||||||||||||  || ||  | | ||||||||||||| ||||     
T  2003 catggcgagtggaaggcgagcttactcgccatggcgaatgaatttactcgcgaggcgagttaaggcggtttagtctctaacagctgacgtggcacaaacc 1904  T
Q  114 cactgggaaagaaagctcaactcgc 138  Q
    || |||  ||| || ||||||||||    
T  1903 caatggcgaaggaacctcaactcgc 1879  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 5063341 - 5063381
Alignment:
Q  98 tgacgtggcagaaactcactgggaaagaaagctcaactcgc 138  Q
    ||||||||||||||| |||||| ||||||||||||| ||||    
T  5063341 tgacgtggcagaaacccactggcaaagaaagctcaagtcgc 5063381  T

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