View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3231_low_110 (Length: 213)
Name: NF3231_low_110
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_110 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 21347733 - 21347852
Alignment:
| Q |
45 |
caacaaggaaatgttaagataaacaataacaaggagaatgaagaagaacaagatgaagatatgggaaagatgggaataaggatannnnnnngtcaacact |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
21347733 |
caacaaggaaatgttaagataaacaataataaggagaatgaagaagaacaagatgaagatctgggaaatatgggaataaggatatttttttgtcaacact |
21347832 |
T |
|
| Q |
145 |
aaagtcaatctagtttcctt |
164 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21347833 |
aaagtcaatctagtttcctt |
21347852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 50725274 - 50725159
Alignment:
| Q |
48 |
caaggaaatgttaagataaacaataacaaggagaatgaagaagaacaagatgaagatatgggaaagatgggaataaggatannnnnnngtcaacactaaa |
147 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |
|
|
| T |
50725274 |
caagtaaatgttaagataaacaataacaaggagaatgaagaagaacaagatgaagatctgggaaagatgggaataaggata-ttttttgtcaacacttaa |
50725176 |
T |
|
| Q |
148 |
gtcaatctagtttcctt |
164 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
50725175 |
gtcaatctagtttcctt |
50725159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 50787576 - 50787687
Alignment:
| Q |
48 |
caaggaaatgttaagataaacaataacaaggagaatgaagaagaacaagatgaagatatgggaaagatgggaataaggatannnnnnngtcaacactaaa |
147 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || |
|
|
| T |
50787576 |
caagtaaatgttaagataaacaataacaaggagaatgaagaagaacaagatgaagatctgggaaagatgggaataaggata-ttttttgtcaacacttaa |
50787674 |
T |
|
| Q |
148 |
gtcaatctagttt |
160 |
Q |
| |
|
||||||||||||| |
|
|
| T |
50787675 |
gtcaatctagttt |
50787687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University