View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_112 (Length: 211)
Name: NF3231_low_112
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_112 |
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Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 2468167 - 2468052
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgc |
113 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
2468167 |
cagagacacctt-gctggtatgtacctgtgccacaccttgtcaacgagactcctgtccaaatgatccccgtgactagtaatgaagcgatatgcctcccgc |
2468069 |
T |
|
| Q |
114 |
accgagtacccatgtac |
130 |
Q |
| |
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||||| ||||||||||| |
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|
| T |
2468068 |
accgaatacccatgtac |
2468052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 12564608 - 12564721
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgc |
113 |
Q |
| |
|
|||||||||||||| | ||||| | | |||| || ||||| | ||||||| | ||||| |||||||||||||||||||| |||| ||| ||||| ||| |
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| T |
12564608 |
cagagacacctttgtcgatatgtgcctaagccaaacattgtcgacgagactcctatccaagtgatccccatgactagtaataaagcgataggcctctcgc |
12564707 |
T |
|
| Q |
114 |
accgagtacccatg |
127 |
Q |
| |
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||||| || ||||| |
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|
| T |
12564708 |
accgaatatccatg |
12564721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 191
Target Start/End: Complemental strand, 2467755 - 2467724
Alignment:
| Q |
160 |
taacgtgcttttaaaacacggtaccacagccc |
191 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
2467755 |
taacgtgcttttaaaacacggtaccacagccc |
2467724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 25987887 - 25987777
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgc |
113 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
25987887 |
cagagacacctttgatggtatgt------gacacaccttgtcaacgagactcctgtccaaatgatccccatgactagtaatgaagcgatatgcctcccgc |
25987794 |
T |
|
| Q |
114 |
accgagtacccatgtac |
130 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
25987793 |
accgagtacccatgtac |
25987777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 7635215 - 7635102
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgc |
113 |
Q |
| |
|
||||||||||||| ||||||| | | ||||| || ||||| | |||| || | ||||| |||||||||||||||||||| |||| || ||||| ||| |
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|
| T |
7635215 |
cagagacacctttaccggtatgtgcctatgccaaacattgtcgacgagattcctatccaagtgatccccatgactagtaataaagcggtaggcctctcgc |
7635116 |
T |
|
| Q |
114 |
accgagtacccatg |
127 |
Q |
| |
|
||||| || ||||| |
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|
| T |
7635115 |
accgaatatccatg |
7635102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 13113368 - 13113255
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgc |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| || |||| |||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
13113368 |
cagagacacctttgatggtatgtaactgtgccaaaccttgtcaacgaaactcctgtctaaatgatccccatgactagtaatgaagcgatatgcctcccgc |
13113269 |
T |
|
| Q |
114 |
accgagtacccatg |
127 |
Q |
| |
|
||||| || ||||| |
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|
| T |
13113268 |
accgaataaccatg |
13113255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 1233579 - 1233463
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgc |
113 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||| | |||| |||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1233579 |
cagagacacctttgctggtatgtaactgtgccaaaccttgtcaacggaactcctgtctaaatgatccccatgactagtaatgaagcgatatgcctcccgc |
1233480 |
T |
|
| Q |
114 |
accgagtacccatgtac |
130 |
Q |
| |
|
||||| || |||||||| |
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|
| T |
1233479 |
accgaataaccatgtac |
1233463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 47772378 - 47772482
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgc |
113 |
Q |
| |
|
|||||||||||||| ||||||| | | || || || ||||| | ||||||| | ||||| |||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
47772378 |
cagagacacctttgccggtatgtgcctatgacaaacattgtcgacgagactcctatccaagtgatccccatgactagtaataaagcgataggcctcccgc |
47772477 |
T |
|
| Q |
114 |
accga |
118 |
Q |
| |
|
||||| |
|
|
| T |
47772478 |
accga |
47772482 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 43041062 - 43040947
Alignment:
| Q |
15 |
agagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgca |
114 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||| | |||| |||| ||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
43041062 |
agagacaccttggatggtatgtaactgtgccaaaccttgtcaacggaactcctgtctaaatgatccccatgattagtaatgaagcgatatgcctcccgca |
43040963 |
T |
|
| Q |
115 |
ccgagtacccatgtac |
130 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
43040962 |
ccgaataaccatgtac |
43040947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 17798526 - 17798639
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgc |
113 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| | || | |||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17798526 |
cagagacacctttgatggtatgtaactgtgccaaaccttgtcatttgaacgcctgtctaaatgatccccatgactagtaatgaagcgatatgcctcccgc |
17798625 |
T |
|
| Q |
114 |
accgagtacccatg |
127 |
Q |
| |
|
| ||| || ||||| |
|
|
| T |
17798626 |
atcgaataaccatg |
17798639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 35780579 - 35780694
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaatgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccgc |
113 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |||||||||| | |||| |||| |||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
35780579 |
cagagacaccttggatggtatgtaactgtgccaaaccttgtcaacggaactcctgtctaaatgatccc-atgactagtaatgaagcgatatgcctcccgc |
35780677 |
T |
|
| Q |
114 |
accgagtacccatgtac |
130 |
Q |
| |
|
||| | || |||||||| |
|
|
| T |
35780678 |
accaaataaccatgtac |
35780694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 25319871 - 25319984
Alignment:
| Q |
14 |
cagagacacctttgatggtatgtacatgtgccacaccttgtcaa-tgagactcttgtccaaatgatccccatgactagtaatgaagccatatgcctcccg |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| | ||| |||| |||| |||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
25319871 |
cagagacacctttgatggtatgtaattgtgccaaaccttgtccactga-actcctgtctaaatgatccccatgactaacaatgaagcgatatgcctcccg |
25319969 |
T |
|
| Q |
113 |
caccgagtacccatg |
127 |
Q |
| |
|
|||||| || ||||| |
|
|
| T |
25319970 |
caccgaataaccatg |
25319984 |
T |
|
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