View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_114 (Length: 201)
Name: NF3231_low_114
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_114 |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 9e-35; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 8842894 - 8842816
Alignment:
| Q |
112 |
gtcatggacaagtcgtatgtgaatataattctaattgaattctggtcaattaattaaatgcaattctaattgtattcat |
190 |
Q |
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| T |
8842894 |
gtcatggacaagtcgtatgtgaatataattctaattgaatactggtcaattaattaaatgcaattctaattgtattcat |
8842816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 8830842 - 8830875
Alignment:
| Q |
137 |
taattctaattgaattctggtcaattaattaaat |
170 |
Q |
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| T |
8830842 |
taattctaattgaattctggtcaattaattaaat |
8830875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 8834548 - 8834581
Alignment:
| Q |
137 |
taattctaattgaattctggtcaattaattaaat |
170 |
Q |
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| T |
8834548 |
taattctaattgaattctggtcaattaattaaat |
8834581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8843014 - 8842981
Alignment:
| Q |
1 |
aaaaagcaccaacaagagagaaaagtatcgactc |
34 |
Q |
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| T |
8843014 |
aaaaagcaccaacaagagagagaagtatcgactc |
8842981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 8647792 - 8647824
Alignment:
| Q |
131 |
tgaatataattctaattgaattctggtcaatta |
163 |
Q |
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| T |
8647792 |
tgaatataattctaattgtattctggtcaatta |
8647824 |
T |
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