View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3231_low_12 (Length: 532)
Name: NF3231_low_12
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 35 - 476
Target Start/End: Original strand, 3598099 - 3598540
Alignment:
| Q |
35 |
aagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagtagtagaaatgtgaatctcaatttcactactaaaaatagtcacatc |
134 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598099 |
aagcatgaaatatagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcactactaaaaatagtcacatc |
3598198 |
T |
|
| Q |
135 |
tcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttgacataaaagttttaagactaaagattt |
234 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598199 |
tcgaatcaagttaatgatacttcagaggttgaaatcaacatatgatgaattttatataaaaacactatagttgacataaaagttttaagactaaagattt |
3598298 |
T |
|
| Q |
235 |
aggaactttacctgaagttttacaaaacaatcacaggaagtgataatcatgattatccaaaaacttttgcattttcacggcatagtcatccgataatgtg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3598299 |
aggaactttacctgaagttttacaaaacaatcacaggaagtgataatcatgattatccaaaaacttttacattttcacggcatagtcatccgataatgtg |
3598398 |
T |
|
| Q |
335 |
caatgaattctattcccccctacaaagtgtaaattaatcaaataaaaagcacgtaattatcagcaattattctgcattgagtaatgttaatagattaaga |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598399 |
caatgaattctattcccccctacaaagtgtaaattaatcaaataaaaagcatgtaattatcagcaattattctgcattgagtaatgttaatagattaaga |
3598498 |
T |
|
| Q |
435 |
cttactctaaatcttctagcgtcgcatccatagccttgctga |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598499 |
cttactctaaatcttctagcgtcgcatccatagccttgctga |
3598540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 4356960 - 4356481
Alignment:
| Q |
1 |
attattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagtagtagaaatgt |
100 |
Q |
| |
|
|||||||||||||| |||||| | ||| | |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4356960 |
attattcaacaaaaatatatttatacatagtcataagcatgaaata--gaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgt |
4356863 |
T |
|
| Q |
101 |
gaatctcaatttcactactaaaaatagtcac--atctcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaattttatataaaaaca |
198 |
Q |
| |
|
||||||||||||| ||| |||||||||||| ||||| | || |||| ||||| |||| ||||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
4356862 |
gaatctcaatttcgctaacaaaaatagtcacgtatctcaactcaagttcctgatacttcaaaggttgagatcaatatatgatgaatattatagaaaaaca |
4356763 |
T |
|
| Q |
199 |
ctatagttgacataaaagttttaagactaaagatttaggaactttacctgaagttttacaaaacaatcacaggaagtgat-aatcatgattatccaaaaa |
297 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||| || |||| |||||||||| ||| |||||||||||||| |||| |
|
|
| T |
4356762 |
ctatagttgacataaaaatttaaatactaaagattaaggaactttacctgaagttttgcagaacagtcacaggaagcgatgaatcatgattatcctaaaa |
4356663 |
T |
|
| Q |
298 |
cttttgcattttcacggcatagtcatccgataatgtgcaatgaattctattcccccctacaaagtgtaaattaatcaaataaaa----agcacgtaatta |
393 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||| ||||| |||||| |
|
|
| T |
4356662 |
ttgttgcattctcacggcatagtcatccgataatgtgcaatgaattctatt-ccccctacgaagtgcaaattaatcaaattaaaagttagcacataatta |
4356564 |
T |
|
| Q |
394 |
tcagcaattattctgcattgagtaatgttaatagattaagacttactctaaatcttctagcgtcgcatccatagccttgctga |
476 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||||| |
|
|
| T |
4356563 |
tcaacaattgttctgcattgagtaatgttaatagattaagacttgctctaaatcttctagcgtcacaaccgtagccttgctga |
4356481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University