View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_17 (Length: 480)
Name: NF3231_low_17
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 24337819 - 24338174
Alignment:
| Q |
1 |
cattttttaacataaattcatttctgggacagtagaaaaataacaacccaagttttgaaatatgataaagttgttgtttttaacacaaatttgtttctgg |
100 |
Q |
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| T |
24337819 |
cattttttaacataaattcatttctgggacagtagaaaaataacaacccaagttttgaaatatgataaagttgttgtttttaacgaaaatttgtttctgg |
24337918 |
T |
|
| Q |
101 |
gtattattcagatgatgatgggagcaagaaacagaaggattcttctgttggttttgctgaatacagtttggatcaactaagagttgcaacagaaggattt |
200 |
Q |
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| T |
24337919 |
gttacttgtagatgatgatgggagcaagaaacagaaggattcttctgttggttttgctgaatacagtttggatcaactaagagttgcaacagaaggattt |
24338018 |
T |
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| Q |
201 |
tcatcagacaacattgtctctgaacatggtgaaaaagctcctaatgttgtctacagaggttgtcttgaagatgataggttggttgctgtgaagcgtttca |
300 |
Q |
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| T |
24338019 |
tcatcagacaacattgtctctgaacatggtgaaaaagctcctaatgttgtctacagaggttgtcttgaagatgataggttggttgctgtgaagcgtttca |
24338118 |
T |
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| Q |
301 |
acaagtctgcttggcctgattctcgtcaattcctagttagtttctgcttctcattc |
356 |
Q |
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| T |
24338119 |
acaagtctgcttggcctgattctcgtcaattcctagttagtttctgcttctcattc |
24338174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 474
Target Start/End: Original strand, 24338235 - 24338292
Alignment:
| Q |
417 |
gtgaaagctttgtttttcatttcttatggttgattaatgttgtgtgtattttattgga |
474 |
Q |
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| T |
24338235 |
gtgaaagctttgtttttcatttcttatggttgattaatgttgtgtgtgttttgttgga |
24338292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 352
Target Start/End: Original strand, 41806988 - 41807146
Alignment:
| Q |
194 |
aggattttcatcagacaacattgtctctgaacatggtgaaaaagctcctaatgttgtctacagaggttgtcttgaagatgataggttggttgctgtgaag |
293 |
Q |
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|||||||||| | ||||||||||| || ||||||||||| || ||||| ||||||||||||| ||| |||||||| | | |||||||||||| ||| |
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| T |
41806988 |
aggattttcacccgacaacattgtatcagaacatggtgagaaggctcccaatgttgtctacaaaggaatgattgaagatcaaatgttggttgctgtaaag |
41807087 |
T |
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| Q |
294 |
cgtttcaacaagtctgcttggcctgattctcgtcaattcctagttagtttctgcttctc |
352 |
Q |
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| T |
41807088 |
cgttttaacaagtctgcttggcctgattcacaccaattcctagttcatttttgcttctc |
41807146 |
T |
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