View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_18 (Length: 479)
Name: NF3231_low_18
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 3463076 - 3462851
Alignment:
| Q |
20 |
gaaaaggtatgaatatttcaaaagaagttgacgaagaaagcaccgagaaaatatgaaaataaaacgcggccattactgtttctggaaaagtgaaataaat |
119 |
Q |
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| T |
3463076 |
gaaaaggtatgaatattaaaaaagaagttgacgaagaaagcaccgagaaaatatgaaaataaaacgcggccattactgtttctggaaaagtgaaataaat |
3462977 |
T |
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| Q |
120 |
tccaccgctatcgtaatccaa---tacctatggctatgaaaacgtacccataaatcgaagaaaagtcaatggtcttgtctcttcacacacgcataaatat |
216 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3462976 |
tccaccgctatcgtaatccaatactacctatgactatgaaaacgtacacataaatcgaagaaaagtcaatggtcttgtctcttcacacacgcataaatat |
3462877 |
T |
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| Q |
217 |
aactccataactcccatttcccattc |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3462876 |
aactccataactcccatttcccattc |
3462851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 303 - 461
Target Start/End: Complemental strand, 3462790 - 3462632
Alignment:
| Q |
303 |
tatatagcaatagtagcatgaaagacatgaaacttgtttggtccccagagagagcaactaactcatacatagacacagttcaagccgtaaccaccaatca |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3462790 |
tatatagcaatagtagcatgaaagacatgaaacttgtttggtccccagagagagcaactaactcatacatagacacagttcaagccgtaaccaccaatca |
3462691 |
T |
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| Q |
403 |
ccttgtcagtgaatctggtgtggcggagtttgtttcagctatggcggcaggatggaacg |
461 |
Q |
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| T |
3462690 |
ccttgtcagtgaatctggtgtggcggagtttgtttcagctatggcggcaggatggaacg |
3462632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 327 - 461
Target Start/End: Complemental strand, 3452747 - 3452610
Alignment:
| Q |
327 |
acatgaaacttgtttggtccccagagagagcaactaactcatacatagacacagttcaagccgtaaccac---caatcaccttgtcagtgaatctggtgt |
423 |
Q |
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|||||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||| || ||||| |||| |
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| T |
3452747 |
acatgaaactagtatggtccccagagagagcaacaaactcatacatcgacacagttcaagcgataaccaccatcaatcacctttctagcgaatccggtgc |
3452648 |
T |
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| Q |
424 |
ggcggagtttgtttcagctatggcggcaggatggaacg |
461 |
Q |
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||||||| | || || ||||||| ||||||||||||| |
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| T |
3452647 |
ggcggagctggtatcctctatggcagcaggatggaacg |
3452610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 4037725 - 4037628
Alignment:
| Q |
20 |
gaaaaggtatgaatatttcaaaagaagttgacgaagaaagcaccgagaaaatatgaaaataaaacgcggccattactgtttctggaaaagtgaaataaat |
119 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4037725 |
gaaaaggtatgaatatt---aaaaaagttgacgaagaaagcaccgagaaaatatgaaaataaaacgcggccattactgtttctggaaaagtgaagtaaat |
4037629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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