View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_19 (Length: 474)
Name: NF3231_low_19
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 27813678 - 27813300
Alignment:
| Q |
1 |
atacttgtgtacattggtcggggcagattttgttatgtggtgccactgcagtagataactttacctgaaatattgataactttctgaaatagttttaaga |
100 |
Q |
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| T |
27813678 |
atacttgtgtacattggtcggggctgattttgttatgtagtgccactgcagtagataactttacctgaaatattgataactttctgaaatagttttaaga |
27813579 |
T |
|
| Q |
101 |
ggagctattagaaacctctaatagcgtaaaggtatcctttctgtttgcattgataatattgcatact-----tttagattttttgttgttagtcgcagat |
195 |
Q |
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| T |
27813578 |
g---ctattagaaacctccaatagtgtaaaggtatcctttctgtttgcattgataatattgcatactctggttttagattgtttgttgttagtcgcagat |
27813482 |
T |
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| Q |
196 |
tttgattaatttaagattaattaagctctttatcctatatctgcttataaatgatttttgccttatgttcttcaccttcaaatttataaaccaaaagtta |
295 |
Q |
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| T |
27813481 |
tttgattaatttaagattaattaagctctttatcctatatctgcttataaatgatttttgccttatgttcttcaccttcaaatttataaaccaaaattta |
27813382 |
T |
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| Q |
296 |
attctgtaaaatggttgcatctttgggctttgttttgattttcttgttttcggctgaatcttctttttcacatatttcaggcacac |
381 |
Q |
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| T |
27813381 |
attctgcaaaa----tgcatctttgggctttgttttgattttcttgttttcggctgcatcttctttttcacatatttcaggcacac |
27813300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 304 - 381
Target Start/End: Complemental strand, 3248382 - 3248305
Alignment:
| Q |
304 |
aaatggttgcatctttgggctttgttttgattttcttgttttcggctgaatcttctttttcacatatttcaggcacac |
381 |
Q |
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| T |
3248382 |
aaatgtttgcatctttgtgctttgttttgattatcttgtttccagctgaatcttcttttgcacatatttcaggcacac |
3248305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 426
Target Start/End: Complemental strand, 3248281 - 3248235
Alignment:
| Q |
380 |
acagaaacaaggacatacgaaaggaatccgagaattgcaaaaggttt |
426 |
Q |
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| T |
3248281 |
acagaaacaagaacatacgaaaggaatccgagaattgcaaaaggttt |
3248235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 31481744 - 31481696
Alignment:
| Q |
5 |
ttgtgtacattggtcgg-ggcagattttgttatgtggtgccactgcagt |
52 |
Q |
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| T |
31481744 |
ttgtgtacattggtcggaggctgattttgttatgtggtgccactgcagt |
31481696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 6761872 - 6761839
Alignment:
| Q |
124 |
gcgtaaaggtatcctttctgtttgcattgataat |
157 |
Q |
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| T |
6761872 |
gcgtaaaggtaccctttctgtttgcattgataat |
6761839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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