View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_2 (Length: 895)
Name: NF3231_low_2
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_2 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 26 - 611
Target Start/End: Original strand, 14993619 - 14994213
Alignment:
| Q |
26 |
cacaacccccaaacctcaaacagtaacatcaaaaactagcacaaaaaaccaacaacctacacctgaatccaaccaaacaactacgaaaccgatnnnnnnn |
125 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14993619 |
cacaacccccaaaccccaaacagtaacatcaaaaactagcacaaaaaaccaacaacctacacctgaatccaaccaaacaactacgaaaccaataaaaaaa |
14993718 |
T |
|
| Q |
126 |
nnncagcccgaacagttgagatgtcttacatgtaagaccaaacaatagataaactaaaacaaacatcaaccaccacaaaacaatcaatagaagccattga |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14993719 |
aa-cagcccgaacagttgagatgtcttacatgtaagaccaaacattctacaaactaaaacaaacatcaaccaccacaaaacaatcaatagaagccattga |
14993817 |
T |
|
| Q |
226 |
acggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccat-------caccagtcacagtgttgccgtt |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| || |
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| T |
14993818 |
acggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaacccgaacaaaaccattacccatcaccactcacagtgttgccatt |
14993917 |
T |
|
| Q |
319 |
ggaaagctgcaacactgtggtttaagagaatcagcgacaaacgaacctagattgaaaaaaca---acaacaatagtaacatcatgatggatgtcataata |
415 |
Q |
| |
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||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
14993918 |
ggaaagctgcaacaccgtcgtttaagagaatcaacgacaaacgaacctagattgaaaaaacaacaacaacaatagtaacatcatgatggatgtcataata |
14994017 |
T |
|
| Q |
416 |
aggaacatcaccaatattattagatattgaaatattcgaaatttgagtaatagtagaaggcacagaataacgagcaattcaaaagtaatgtagaagattt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14994018 |
aggaacatcaccaatattattagatattgaaatattcgaaatttgagtaatagtagaaggcacagaataacgagcaattgaaaagtaatgtagaagattt |
14994117 |
T |
|
| Q |
516 |
tgttgttttaaagggtaatttagcttaaagttagtaacatttttaaatactttaattcttccataaattcaattatcataccttgatactcaacga |
611 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |
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| T |
14994118 |
tgttgttttaaagggtaatttagcttatagttagtaacatttttaaatactttaatttttccatagattcatttatcataccttgatactcaacga |
14994213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 614 - 757
Target Start/End: Original strand, 14994360 - 14994503
Alignment:
| Q |
614 |
acaccaacacatccatgaacctggaatcaagcatgcatatccgactccgaaataattgatttcattgcatcatcaatatactcttccataacttgtttga |
713 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14994360 |
acaccaacacattcatgaacctggaatcaagcatgcatatccgactccgaaataattgatttcattgcatcatcaatatactcttccataacttgcttga |
14994459 |
T |
|
| Q |
714 |
atattttcgatatgtaggaaacacaagcgttgtttgtgcttcct |
757 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14994460 |
atattttcgatatgtaggaaacacaagccttgtttgtgcttcct |
14994503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 133 - 322
Target Start/End: Complemental strand, 27741276 - 27741088
Alignment:
| Q |
133 |
ccgaacagttgagatgtcttacatgtaagaccaaacaatagataaactaaaacaaacatcaaccaccacaaaacaatcaatagaagccattgaacggcaa |
232 |
Q |
| |
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||||||||||||||||||||||| ||| |||||| ||| ||||||||||||| |||||||||||||| |||| |||||||||||||||||||| ||||| |
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| T |
27741276 |
ccgaacagttgagatgtcttacacctaacaccaaa-aatcgataaactaaaactaacatcaaccaccataaaaaaatcaatagaagccattgaatggcaa |
27741178 |
T |
|
| Q |
233 |
ccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccatcaccagtcacagtgttgccgttggaa |
322 |
Q |
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|| ||||||||||||||||| |||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||| |
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| T |
27741177 |
ccgaagagcgacgaaaccaccaaaacccaggatcacaaatcaaagacaaaccaaacaaaaccatcaccacgcacagtgttcccattggaa |
27741088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 735 - 879
Target Start/End: Original strand, 14994536 - 14994681
Alignment:
| Q |
735 |
cacaagcgttgtttgtgcttcctccgttgacatggattaggtaggagtaaacgacggnnnnnnn-gcagagaggatgggagaagagtattagggttttat |
833 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| |
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| T |
14994536 |
cacaagccttgtttgtgcttcctccgttgacatggattaggtaggagtaaatgacggtttgttttgcagaggcagtgggagaagagtattagggttttat |
14994635 |
T |
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| Q |
834 |
attttgacgggaggagaaatattagggttgattagtcgtacaaggg |
879 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
14994636 |
attttgaccggaggagaaatattagggttgattagtcatacaaggg |
14994681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 8e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 85 - 385
Target Start/End: Original strand, 19658312 - 19658609
Alignment:
| Q |
85 |
cacctgaatccaaccaaacaactacgaaaccgatnnnnnnnnnncagcccgaacagttgagatgtcttacatgtaagaccaaacaatagataaactaaaa |
184 |
Q |
| |
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||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| |
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| T |
19658312 |
cacctgaatccaaccaaacgactacgaaaccaatcaaaaaa---cagcccgaacagttgagatgtcttacacctaagacgaaacaatggataaactaaaa |
19658408 |
T |
|
| Q |
185 |
caaacatcaaccaccacaaaacaatcaatagaagccattgaacggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaacc |
284 |
Q |
| |
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| |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||| |
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| T |
19658409 |
ctaacatcaaccaccacaaaacaaccaatagaagccattgaaccacaaccagagagcgacgaaaccactaaaacccagaattacaaataaaagacaaacc |
19658508 |
T |
|
| Q |
285 |
gaacaaaaccatcaccagtcacagtgttgccgttggaaagctgcaacactgtggtttaagagaatcagcgacaaacgaacctagattgaaaaaacaacaa |
384 |
Q |
| |
|
||| || ||||||||| |||| |||| || || || || ||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19658509 |
aaacgaagccatcaccacgcacactgtttccattagagagatgcaacatcgtcgtttaagagaatcaacgacaaacgaacctagattgaaaaaacaacaa |
19658608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 129 - 311
Target Start/End: Original strand, 54200551 - 54200733
Alignment:
| Q |
129 |
cagcccgaacagttgagatgtcttacatgtaagaccaaacaatagataaactaaaacaaacatcaaccaccacaaaacaatcaatagaagccattgaacg |
228 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54200551 |
cagcccgaacagtttagatgtcttacacttaagaccaaacaatctataaactaaaactaacatcaaccaccacaaaacaatcaatagaagccactgaacg |
54200650 |
T |
|
| Q |
229 |
gcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccatcaccagtcacagtgt |
311 |
Q |
| |
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|||| |||| ||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
54200651 |
acaacttgagagtgacgaaaccacaaaaactcagaatcacaaatcaaagataaaccaaacaaaaccatcaccacacacagtgt |
54200733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 54200735 - 54200779
Alignment:
| Q |
338 |
gtttaagagaatcagcgacaaacgaacctagattgaaaaaacaac |
382 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
54200735 |
gtttaagagaatcagcaacaaacaaacctagattgaaaaaacaac |
54200779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 8e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 130 - 385
Target Start/End: Original strand, 22577779 - 22578032
Alignment:
| Q |
130 |
agcccgaacagttgagatgtcttacatgtaagaccaaacaatagataaactaaaacaaacatcaaccaccacaaaacaatcaatagaagccattgaacgg |
229 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||| |||| |||||||||||||||||||||| | |
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|
| T |
22577779 |
agcccaaacagttgagatgtcttacacctaagaccaaacaatcgataaactaaatctaacatcaaccacgacaa--caatcaatagaagccattgaacag |
22577876 |
T |
|
| Q |
230 |
caaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccatcaccagtcacagtgttgccgttggaaagctgca |
329 |
Q |
| |
|
| || | ||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||| | | || |||| ||||||| |||||||| |||| |
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|
| T |
22577877 |
cgacgagagatcgacgaaaccaccaaaacctagaatcacaaatcaaagacaacccaaacaaaaccttgaacacgcacaatgttgccattggaaagttgca |
22577976 |
T |
|
| Q |
330 |
acactgtggtttaagagaatcagcgacaaacgaacctagattgaaaaaacaacaac |
385 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
22577977 |
acactgtcgtttaagagaatcagtgacaaacgaacctagattgaaaaaacaacaac |
22578032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 643 - 737
Target Start/End: Original strand, 3093972 - 3094066
Alignment:
| Q |
643 |
agcatgcatatccgactccgaaataattgatttcattgcatcatcaatatactcttccataacttgtttgaatattttcgatatgtaggaaacac |
737 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||| || ||||| |||||||||| |||||||| |
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| T |
3093972 |
agcacgcatatccgactcaataataattgatttcattgcatcatctctatattcttccttaacttgctttaatatcttcgatatgttggaaacac |
3094066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 223 - 385
Target Start/End: Original strand, 54662 - 54824
Alignment:
| Q |
223 |
tgaacggcaaccaaagagcgacgaaaccactaaaacctagaatcacaaatcaaagacaaaccgaacaaaaccatcaccagt-cacagtgttgccgttgga |
321 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||| |||| ||| ||||| | | || || | ||| | ||| |||||| ||||| | |
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| T |
54662 |
tgaacggcaaccggagagcgacgaaaccaccaaaacctagaatcataaataaaaaacaaaaccatcaccacgagcacaaacgcac-gtgttgtcgttgaa |
54760 |
T |
|
| Q |
322 |
aagctgcaacactgtggtttaagagaatcagcgacaaacgaacctagattgaaaaaacaacaac |
385 |
Q |
| |
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|||||||||||| || ||||||||||||||| ||||||| |||||||||| ||| |||||||| |
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|
| T |
54761 |
aagctgcaacaccgtcgtttaagagaatcagtgacaaacaaacctagattaaaactacaacaac |
54824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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