View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_21 (Length: 467)
Name: NF3231_low_21
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_21 |
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| [»] scaffold0735 (2 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 42923223 - 42923571
Alignment:
| Q |
9 |
agacatgattgaacgtacaatgcttatattaaacaatatacaaaacattttccttaaacaaagaacactttatgcatgtggtgagaagaaatgagagtca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923223 |
agacatgattgaacgtacaatgcttatattaaacaatatacaaaacattttccttaaacaaagaacactttatgcatgtggtgagaagaaatgagagtca |
42923322 |
T |
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| Q |
109 |
aaaaaggaagagtagtacaattgagagcagaattgttggatgaatttggttgggtggatttccttgtatgtagaaattggtaaaagattaagaagagaaa |
208 |
Q |
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| T |
42923323 |
aaaaaggaagagtagtacaattgagagcagaattgttggatgaatttggttgggtggatttccttgtatgtagaaattggtaaaagattaagaagagaaa |
42923422 |
T |
|
| Q |
209 |
gagaaaaacagtggattaaaaatggtaatgggaagctttatcgtatggagtgtttggaaggaacaagagtgggaatcctattgtcagaattttcattcat |
308 |
Q |
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| T |
42923423 |
gagaaaaacagtggattaaaaatggtaatgggaagctttatcgtatggagtgtttggaaggaacaagagtgggaatcctattgtcagaattttcattcat |
42923522 |
T |
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| Q |
309 |
ttgtattggttttgtgcattctgccacccccttcctgcactacttgcag |
357 |
Q |
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| T |
42923523 |
ttgtattggttttgtgcattctgccacccccttcctgcactacttgcag |
42923571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 467
Target Start/End: Original strand, 42923637 - 42923681
Alignment:
| Q |
423 |
aaactgtctctcacggtaagattctactccaatattactgagttc |
467 |
Q |
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| T |
42923637 |
aaactgtctctcacggtaagattctactccaatattactgagttc |
42923681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0735 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold0735
Description:
Target: scaffold0735; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 79 - 357
Target Start/End: Original strand, 5024 - 5303
Alignment:
| Q |
79 |
tatgcatgtggtgagaagaaatgagagtcaaaaaaggaagagtagtacaattgagagcagaa-ttgttggatgaatttggttgggtggatttccttgtat |
177 |
Q |
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| T |
5024 |
tatgcatgtggtgagaagagatgagagtcaaaaaaggaagagtagtacaattgagaggagaggttgttggatgaatttggttgggtggatttccttgtat |
5123 |
T |
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| Q |
178 |
gtagaaattggtaaaagattaagaagagaaagagaaaaacagtggattaaaaatggtaatgggaagctttatcgtatggagtgtttggaaggaacaagag |
277 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5124 |
gtagaaattggtgaaagattaagaagagagagagaaaaacagtggagtaaaaatggtaatgggaagctttatcgtatggattgtttggaaggaacaagag |
5223 |
T |
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| Q |
278 |
tgggaatcctattgtcagaattttcattcatttgtattggttttgtgcattctgccacccccttcctgcactacttgcag |
357 |
Q |
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| T |
5224 |
tgggaatcctattgtcagaattttcattcatttgtattggttttgtgcattgtgccacccccttcctgcactacttgcag |
5303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0735; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 467
Target Start/End: Original strand, 5369 - 5413
Alignment:
| Q |
423 |
aaactgtctctcacggtaagattctactccaatattactgagttc |
467 |
Q |
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| T |
5369 |
aaactgtctctcacggtaagattctactccaatattactgagttc |
5413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 15107 - 14880
Alignment:
| Q |
9 |
agacatgattgaacgtacaatgcttatattaaacaatatacaaaacattttccttaaacaaagaacactttatgcatgtggtgagaagaaatgagagtca |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15107 |
agacatgattgaacgtacaatgcttatattaaacaatatacaaaacattttccttaaacaaagaacactttatgcatgtggtgagaagaaatgagagtca |
15008 |
T |
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| Q |
109 |
aaaaaggaagagtagtacaattgagagcagaattgttggatgaatttggttgggtggatttccttgtatgtagaaattggtaaaagattaagaagagaaa |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15007 |
aaaaaggaagagtagtacaattgagagcagaattgttggatgaatttggttgggtggatttccttgtatgtagaaattggtaaaagatt-agaagagaaa |
14909 |
T |
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| Q |
209 |
gagaaaaacagtggattaaaaatggtaatgg |
239 |
Q |
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| T |
14908 |
gag-aaaacggtggatt-aaaatggtaatgg |
14880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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